Gene detail

Detail information of GWHGAAEX001572/evm.TU.scaffold_11.198

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0167	1.00E-38	FOG: Armadillo/beta-catenin-like repeats
nr	gi\|743794284\|ref\|XP_010924135.1\|	0	PREDICTED: uncharacterized protein LOC105047048 [Elaeis guineensis]
trEMBL	tr\|A0A061E7Q1\|A0A061E7Q1_THECC	0	ARM repeat superfamily protein isoform 2 {ECO:0000313\|EMBL:EOY01035.1}
TAIR	AT1G23180	1.00E-38	ARM repeat superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000013	10085232	10142403	+

Transcript Sequence
>GWHTAAEX001572 ATGGCTTTCTCGGTGGGATCCTGCTCAAACATCAGGCTTTTCGCCTGCAACCATTCCCGGCGCAGCGGCCGGCTCGATGTTTTAACAATCATAAGCCGAAGCCATCTTCCTGTGGTTACTCATACTATTTCTCTCTCGTCTCGCGAACATCCCATCCTCACTCGCGCTACCGCCGGCGACGGTGGGTCCACTGAGTTTAACCCTGCTCAGCCATCCTTGTCTGAGGACACGGAAATGGCCAATTGCAAAGCTAACTCTGGAGAAGGTTATATTGGACTGTTTGTCCAAATGCTGGGTCTAGCCAATAATCTTGTAGACAGAGAACTTGCAGTGATGACGCTCTGGAGATATTCTAATGGGGGTAGAGATTCTATTGATGGTATCATGAAATTTCCTGGCTGTGTGAATCTCGTTCTCAATCTTTTGAAATCAGACAACCCTTCTATATGTGAAGCAGTTGTAGGCCTTCTGCACAACATATCTTCAGTTTGTTTGTACAGAAAAATTATAGCTGCAAATGGAGTGATTGAAGAAATTACTTGGCTTCTTCATCAATCTTCTTTGACATTAGGGGTTAAAGAGCAAAGTTTATGCACTTTGTGGAATTTATCAATTGATGAGAACCTTAGAATGAAGATAGCACATACTGATCTCATGCCACTTCTTATTAAATTCCTTGATGACAATGAAATCAAGGTGCAAGAGGCTGCTGGAGGTGTTTTGGCAAATCTGTCCTTGGGCCCCTGCAATCACCATAATATGGTTGAAGCTGGTATAATCCCAAAGCTGGCAAACATTTTCAAAAACGATGCTGAGGGGCTTGAAGTGATCCGAAAATCGGTAAAAACTGCATTACTTGAGTTATCTAAAAATGATAACTACAAAATACTTATTATTGAGGAGGGTCTAATACGAGTCCCTATAATTGGTGCTGCTGCCTACAAATCCTTCAGGCCACATTCCAATTCTTGGCCTTCTTTACCTGATGGTACCAATTTAGAACGAACTTCGCGCTCCTCAAAATATGGTGCAACTGAATTATTACTTGGACTTAGTGTTTGTGAAAAGAACATAAATTTGGAAGAATCAAAGATTAATGCCATAGTTGGACGATCTCAGCAGCAATTTCTAGCACAAATTCATGCTTTTTCAGATGATCAAAGTTTATCAGAATCTGCCTCATCTTTAAAACAGCAACATACACTTTTACCATGGATAGATGGTGTTGCTCGGCTAGTTTTGTTCCTTGGACTTGAAGATGCCTTAGTAATCACGAGAGCTGCTTACTCAATTGCTGATTCTTCAATCAGTGAGCATTTGAGGATATCATTTAAGGAAGCTGGAGCTATTAAACTTTTGGTTCAGTTACTTTCTCACGATGATAAAGCTGTTCAAGATGCTGCGGTTTATGCCTTAGAAAGGCTTAGCCAAAGTTATGAAGTGTGTCAAGCAATTGAAGCGGAAGATATTGTGCATCCTTTATTTAATATGATCAAGCGTGCAAATGTAGCCGAAAGCACATTGGAAAAGATCATTGATATATTGAATCGAGTTATTGACCCAGGGAGATACATTGGAAGAAAGCTCCAACATAAGCTAGTCTCTGGATCAGACAAAATGGCCAATTCTTTGTATAGTACTATAAAAAAGGATGCAATTTTGAGAACCGCTGAGACTTCTATGCTTGAGTTAATTTCAAGAGCTATAAACTTGGATGTTGTGCACTACCTCATTAAAATTTTAAAGAAGTCACTCCAGCTTTGCAGTCAAAGATGGCTTCCATCTTTGAGCATTTGACAAGTTTTGAACCATATGCCATGATTCTAGCAACTTCTGATATTGAATCAGGGATACATGCTGTATTTCAGAATTTGTCTTCGAAGGGTATGCATCTTTTATATCTTTCATGTGACTTGATTATTTATGCAAGTATTTGCAACAGGCATTGGTTTTCATATGTGGAGTGCATTGTCTTAATTCCATGACCTCATGCCATTCAAGATAGGAAGTACATTTGCTGCGACCATGTAAACTTTTTAAATTGTGTGGAAAGACTTTTTGTAAATGGAAGTCATGCCAATATGAGCTATTAGACGAGAGGTCCTTTTTCTTCTGGAGAATCAGTCATATGTAATCTGCCTGAACATGAAGAAAAAATTGAGAAAAGGAGCCTTCTCCCATGGCCTTTTCATTTTAAAGAAAATAAAGGAAAACAACTGAAAAATGCTAGTGGTTAGGAAAAAAAACCATGAGTTAGTTGTCTTCTAAAGGTGGAATTACCTTCTCCCATGGCCTTTTAATTTTAAAGAAAATAAAGGAA

Network for GWHGAAEX001572

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00514.22	Arm	441	476	7.70E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.530
SRP064423	SRR2545915	Juvenile tuber	6.410
SRP108465	SRR5643513	five period of Gastrodia elata	3.540
	SRR5643514	five period of Gastrodia elata	3.660
	SRR5643515	five period of Gastrodia elata	3.800
	SRR5643524	five period of Gastrodia elata	4.240
	SRR5643525	five period of Gastrodia elata	4.020
	SRR5643528	five period of Gastrodia elata	5.110
	SRR5643658	five period of Gastrodia elata	4.910
	SRR5643659	five period of Gastrodia elata	4.240
	SRR5643660	five period of Gastrodia elata	4.220
	SRR5643661	five period of Gastrodia elata	3.820
	SRR5643662	five period of Gastrodia elata	3.740
	SRR5643663	five period of Gastrodia elata	3.730
	SRR5643664	five period of Gastrodia elata	4.220
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.610
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.770
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.660
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.350
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.270
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.090
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.230
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.280
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.730
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.080
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.490
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.490
SRP279888	Gastro	Gastrodia elata tuber	6.46
	Juven	Juvenile tuber	9.09
	Mother_Gastro	Mother tuber of Gastrodia elata	6.19
	Mother_Juven	Mother tuber of Juvenile	8.20