Detail information of GWHGAAEX001579/evm.TU.scaffold_11.213


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG00141.00E-06MADS box transcription factor
nrgi|674919098|emb|CDY14080.1|1.16E-06BnaC02g01970D [Brassica napus]
Swissprottr|Q7XJK5|AGL90_ARATH2.00E-06Agamous-like MADS-box protein AGL90
trEMBLtr|A0A078FI32|A0A078FI32_BRANA4.00E-07BnaC02g01970D protein {ECO:0000313|EMBL:CDY14080.1}
TAIRAT5G270501.00E-06AGAMOUS-like 101

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000131057433510576339+
Transcript Sequence

Network for GWHGAAEX001579

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00319.17SRF-TF951243.40E-09
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyMADS-M-type

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.000
SRR2545915Juvenile tuber0.000
SRP108465SRR5643513five period of Gastrodia elata0.000
SRR5643514five period of Gastrodia elata0.000
SRR5643515five period of Gastrodia elata0.000
SRR5643524five period of Gastrodia elata0.000
SRR5643525five period of Gastrodia elata0.730
SRR5643528five period of Gastrodia elata0.000
SRR5643658five period of Gastrodia elata0.700
SRR5643659five period of Gastrodia elata0.000
SRR5643660five period of Gastrodia elata0.000
SRR5643661five period of Gastrodia elata0.200
SRR5643662five period of Gastrodia elata1.430
SRR5643663five period of Gastrodia elata0.310
SRR5643664five period of Gastrodia elata0.940
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_10.000
SRR6049655Rhizomagastrodiae_C368-T10_good_10.000
SRR6049656Rhizomagastrodiae_C368-T07_good_10.000
SRR6049657Rhizomagastrodiae_C368-T07_good_10.000
SRR6049658Rhizomagastrodiae_C368-T04_good_10.000
SRR6049659Rhizomagastrodiae_C368-T04_good_10.000
SRR6049660Rhizomagastrodiae_C368-T01_good_10.000
SRR6049661Rhizomagastrodiae_C368-T04_good_10.000
SRR6049662Rhizomagastrodiae_C368-T01_good_10.000
SRR6049663Rhizomagastrodiae_C368-T01_good_10.000
SRR6049664Rhizomagastrodiae_C368-T10_good_10.000
SRR6049665Rhizomagastrodiae_C368-T10_good_10.000
SRP279888GastroGastrodia elata tuber 0.38
JuvenJuvenile tuber0.00
Mother_GastroMother tuber of Gastrodia elata 0.00
Mother_JuvenMother tuber of Juvenile 0.00