Gene detail

Detail information of GWHGAAEX001583/evm.TU.scaffold_110.5

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2171	0	Karyopherin (importin) beta 3
nr	gi\|672162468\|ref\|XP_008801050.1\|	0	PREDICTED: LOW QUALITY PROTEIN: probable importin subunit beta-4 [Phoenix dactylifera]
Swissprot	tr\|B8ARW2\|TNPO1_ORYSI	8.00E-08	Transportin-1
trEMBL	tr\|B8AKC0\|B8AKC0_ORYSI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:EEC74901.1}
TAIR	AT4G27640	0	ARM repeat superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000110	131901	159440	-

Transcript Sequence
>GWHTAAEX001583 TGCCACATTACTTCAGATCGCTCTTAGATTGCTCGACAGACGCGGCGGCGATGGCTCAGTCATTAGAGCTTCTCTTAATTCAGTTCCTGATGCCAGACAACGACGCTAGGCGGCAAGCAGAGGAGCAGATCAAGCGGTTGGCAAAGGACCCGCAGGTGATCCCGGCTCTTGTACATCACCTTCGCACGGCCAAGACGCCTAACGTTCGCCAGCTCTCTGCCGTCCTCCTTCGCAAGAAGATAACCGGACATTGGGGTAAGCTTCCCCATCATGTCAAGCAATCAGTCAAGGCCGCTCTCATCGAAAGCATCACACTTGAACACAGTTCACTAGTGAGACGGGCTAGTGCAAATGTTGTGAGCATTATTGCTAAATATGCTGTCCCTGCAGGAGAGTGGCCTGATTTGTTGCCTTTTCTTTTCCAATGTAGCCAAAGTTCTCAAGAAGATCATAGAGAAGTGGCTTTGATTCTCTTTGGCTCACTCACTGAAACAATTGGCCCTACATTTCAAACCCATATTGTAGATTTGCAGCATATACTATTGAAATGCTTGCAAGATGAAAGCAGCAGTCCTGTAAGAATTGCTGCTCTAAAGGCCGTTGGTTCTTTGATAGAATTCGTTAATGACGGCGCTGATGTGGTGAAGCTGTTCCGGGATTTTGTTCCCAGTATCTTGAATATATCAAGACAGTGCCTTGCCAATAGGGATGAAGATGTTGCTTCTGTTGCCTTTGAAATATTTGACGAACTCATTGAGTCGCCTGCACCTCTTCTTGGTGATTCTGTTCAATCTATAGTTCAATTTTCATTAGAAGTTTGTTCTAGCCAGAACTTGGAACTTAACATTCGTCATCAGGCAATTCAGATAATTTCATGGCTTGCAAAGTACAAGGCTTCTTTTTTAAAAAAGCATAAGCTTGTTGTGCCAATCCTGCGAGTGATGTGCCCTTTGCTTGCAGAAAATACTTCTGGAGATGAAGATTCTGATCTGGCATCAGATAGAGCTGCTGCTGAAGTACTAGATACAATGTCTATTAACCTGCCAAAGCAAGTGTTTCCACCAGTGTTTGAGTTTGCTTCTTTGAGTTATCATCATGCAAACCCAAAATTTAGGGAAGCTTCCGTTACAGCTTTGGGAGTTATATCGGAAGGGTGTTTTGATTTGCTGAAAGATAGGTTGGAAATTGTTCTGAATATAGTTTTAGCAGCTTTGAAAGATCATGAACAAATGGTGAGGGGGGCTGCTTCATTTGCTTTGGGTCAATTTGCAGAACATTTGCAACCTGAGATTTTGTCTCACTATTCAACTGTTCTTCCTTGTATCCTAAATGCAATTGAAGATGCTTCGGAAGAAGTAAAGGAAAAATCATATTATGCACTGGCAGCATTTTGTGAGGACATGGGCGAAGATATACTTTCTTATCTTGATCCCCTTATGGGGAAGTTAGTTGCGTCTATCCAGTGCAATCAAAGAAATCTACAAGAAACCTGCATGTCTGCAATTGGCTCAGTAGCTGTTGCTGCAGAAAAAGCTTTTATACCATATGCCGAAAAGGTTCTAGATTTGATGAAAACTTTTTTGGTTCTAACAAATGATGAGGACTTGCGGTCAAGAGCTCGTGCAACTGAGTTAGTTGGAATTGTTGCTTTGGCTGTAGGACATGAGAGGATGGAACCAATATTATCCCCTTATATGGAATCAGCAATCTCTGGATTTGCATTAGAATTTAGCGAGCTTCGAGAATACACTCATGGTTTTTTTAGTAATATTGCAGAAATGTTGGGTGATGGTTTCTCGCAGTACCTTTCCCATGTTGTTCCTCTGGTATTTTCTTCATGCAATCTTGATGACGGGTCTGCTGTGGACATTGACGATGCTGACAGCATTGATAATGGATTTGGAGGTGTATCCTCTGATGATGATACTTATGATGAACCAAGAATTCGCAATATCAGTGTGAGAACTGGGTTGTTAGACGAGAAGGCTGCAGCAAGCCAGGCGATTGGCATGCTTGCACTTTACACTAAGAAATCTTTTGCACCTTATGTGGAGGAGTCCATGAAGATTTTAGTACGGCACTCCACATATTTTCATGAAGATGTACGACTGCAGGCTATTATTTCCTTGAAACACGTTTTGTCAGTTGTGCAGGCAATTGCTGCTGAACACATTGACATTGTAGAGAAACAAAAGGAAATTCTTGGAACTGTGTTCAATATCTACATCACGACAATGACTGATGATGAGGACAAAGAAGTTGTTGCTCAAGCTTGCATGAGTGTGGCAGAAATTATGAAAGACTTCAGTTATCCGTTCATAGCTCCTTATATGCCAAATCTTGCTGAGGCGACACTTACTTTACTTCAGGAAGATTCATGTTGTCAGAAATCAGATTCTGATTCTGACATTGATGATGGTGAATTTAATCACGATGAAGTGCTCATGGATGCTGTATCAGACCTTCTCCCTGCCTTTGCTAAAGCTATGGGTTCTAATTTTGAGCCAGTTTTTGCCAAGTTTTTCGATCCTTTAATGAGATTTGCAAAAGCTTCCCGGTCTCCTGAAGATCGAACTATGGTAGTTGCTTGCCTAGCTGAAGTTGCTCAAGATATGGGAGCTCCAATTTCCAGTTATGTTGATAGGGTAATGCCCTTGGCACTGAAGGAGCTGTCATCCTCAGAGGCAACTAACAGGAGAAACGCTGCATTTTGCATGGGCGAGCTGTGCAAAAATGGTGGCACATGTGCATTAAAATACTTTGGGGATGTACTTCGTGGACTGTACCCTTTATTTGGCGAGTCTGAATCAGATGATGTTGTCAGAGACAACGCTGCGGGTGCTGTCTCAAGGATGATAATGGCGCAGCCTCAGTCCATTCCTCTAGATCAGGTCCACATTTGTGTTCTACCTGTACTTCTTAAAGCACTGCCATTGAAGGAAGACCTTGAGGAGTCAATGGTGGTGTACAGCTGTATCTGCAAACTGATACTGTCATCAAACCCACAGATCCTTCCTTTAGTTCCAAAAGTGGTTAACATTTTTGCTCAAGTTGCTGTTTCCCCATTTGAAAGGGAAGATGTCAAAAGTCAAATTGGGATAGCTTTATCTCACTTGATCTCAGTATATGGCCATCAAATGCAACCTATACTAAGTGCTCTTTCGCCTGTTCATGCTAATTCGCTGGCTGCTTTAGCTAATAAAATGTAGTAATCCATCCACCAAGCTATAGCAACTCTTTCCTATTCTTTAGCAGGTTCCACAGGCTGCTGCCATTCGCTCTTTTGCCGGGGATGATGGCTCTTTCATTTTTTGGTTGACGATTGGCAATATATATTGTGCTTATTACACATTCAATTATTTATTTATATTGGGTTTTTGTGCATGTTTGTGCTCAGATAATCATGGCGTCCTTGCCCTTCTTAGCACCATTCATTGTGTGTAAATGTATACATATTCTTTTGCATGTAAAAGGTTTTAGTATATTTGTTATTTTCTGATTGCAATGAATTTTATAGTGCTAGAAAGGGCTGAATGAGATGCTTTCTATGGTGCATTTAATAGGGAAGGATTGTTGGTCCTCATAAACTAGTACCTTGCTTTCTGGGTACATAAAATTTATGCTTCTCC

Network for GWHGAAEX001583

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03810.18	IBN_N	23	87	1.60E-13
PF02985.21	HEAT	162	190	0.0018
PF02985.21	HEAT	380	410	0.00046

Protein Sequence

>GWHPAAEX001583
MAQSLELLLIQFLMPDNDARRQAEEQIKRLAKDPQVIPALVHHLRTAKTPNVRQLSAVLLRKKITGHWGKLPHHVKQSVKAALIESITLEHSSLVRRASANVVSIIAKYAVPAGEWPDLLPFLFQCSQSSQEDHREVALILFGSLTETIGPTFQTHIVDLQHILLKCLQDESSSPVRIAALKAVGSLIEFVNDGADVVKLFRDFVPSILNISRQCLANRDEDVASVAFEIFDELIESPAPLLGDSVQSIVQFSLEVCSSQNLELNIRHQAIQIISWLAKYKASFLKKHKLVVPILRVMCPLLAENTSGDEDSDLASDRAAAEVLDTMSINLPKQVFPPVFEFASLSYHHANPKFREASVTALGVISEGCFDLLKDRLEIVLNIVLAALKDHEQMVRGAASFALGQFAEHLQPEILSHYSTVLPCILNAIEDASEEVKEKSYYALAAFCEDMGEDILSYLDPLMGKLVASIQCNQRNLQETCMSAIGSVAVAAEKAFIPYAEKVLDLMKTFLVLTNDEDLRSRARATELVGIVALAVGHERMEPILSPYMESAISGFALEFSELREYTHGFFSNIAEMLGDGFSQYLSHVVPLVFSSCNLDDGSAVDIDDADSIDNGFGGVSSDDDTYDEPRIRNISVRTGLLDEKAAASQAIGMLALYTKKSFAPYVEESMKILVRHSTYFHEDVRLQAIISLKHVLSVVQAIAAEHIDIVEKQKEILGTVFNIYITTMTDDEDKEVVAQACMSVAEIMKDFSYPFIAPYMPNLAEATLTLLQEDSCCQKSDSDSDIDDGEFNHDEVLMDAVSDLLPAFAKAMGSNFEPVFAKFFDPLMRFAKASRSPEDRTMVVACLAEVAQDMGAPISSYVDRVMPLALKELSSSEATNRRNAAFCMGELCKNGGTCALKYFGDVLRGLYPLFGESESDDVVRDNAAGAVSRMIMAQPQSIPLDQVHICVLPVLLKALPLKEDLEESMVVYSCICKLILSSNPQILPLVPKVVNIFAQVAVSPFEREDVKSQIGIALSHLISVYGHQMQPILSALSPVHANSLAALANKM

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006886	Biological Process	intracellular protein transport
GO:0005515	Molecular Function	protein binding
GO:0008536	Molecular Function	Ran GTPase binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	23.430
SRP064423	SRR2545915	Juvenile tuber	23.270
SRP108465	SRR5643513	five period of Gastrodia elata	19.850
	SRR5643514	five period of Gastrodia elata	20.760
	SRR5643515	five period of Gastrodia elata	20.340
	SRR5643524	five period of Gastrodia elata	20.870
	SRR5643525	five period of Gastrodia elata	24.280
	SRR5643528	five period of Gastrodia elata	24.830
	SRR5643658	five period of Gastrodia elata	25.870
	SRR5643659	five period of Gastrodia elata	23.990
	SRR5643660	five period of Gastrodia elata	25.500
	SRR5643661	five period of Gastrodia elata	22.160
	SRR5643662	five period of Gastrodia elata	22.240
	SRR5643663	five period of Gastrodia elata	24.970
	SRR5643664	five period of Gastrodia elata	23.190
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	32.320
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	20.920
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	35.600
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	30.500
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	40.900
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	37.950
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	36.780
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	38.820
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	40.210
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	44.010
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	29.530
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	29.530
SRP279888	Gastro	Gastrodia elata tuber	40.27
	Juven	Juvenile tuber	25.53
	Mother_Gastro	Mother tuber of Gastrodia elata	27.86
	Mother_Juven	Mother tuber of Juvenile	29.26