Detail information of GWHGAAEX001588/evm.TU.scaffold_110.14
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0014 | 7.00E-36 | MADS box transcription factor |
| nr | gi|695030649|ref|XP_009402798.1| | 9.80E-50 | PREDICTED: agamous-like MADS-box protein AGL61 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q4PSU4|AGL61_ARATH | 2.00E-34 | Agamous-like MADS-box protein AGL61 |
| trEMBL | tr|M0T1X8|M0T1X8_MUSAM | 4.00E-50 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P26530_001} |
| TAIR | AT2G24840 | 7.00E-36 | AGAMOUS-like 61 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000110 | 517567 | 518910 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001588
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00319.17 | SRF-TF | 22 | 69 | 1.20E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MADS-M-type |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.390 |
| SRR2545915 | Juvenile tuber | 0.550 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.210 |
| SRR5643514 | five period of Gastrodia elata | 0.780 | |
| SRR5643515 | five period of Gastrodia elata | 0.580 | |
| SRR5643524 | five period of Gastrodia elata | 0.520 | |
| SRR5643525 | five period of Gastrodia elata | 0.100 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.080 | |
| SRR5643659 | five period of Gastrodia elata | 0.170 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.090 | |
| SRR5643663 | five period of Gastrodia elata | 0.140 | |
| SRR5643664 | five period of Gastrodia elata | 0.090 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.150 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.220 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.800 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.350 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.450 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.710 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.650 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.510 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.340 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.240 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.660 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.660 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.81 |
| Juven | Juvenile tuber | 0.11 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.04 | |
| Mother_Juven | Mother tuber of Juvenile | 0.22 |