Detail information of GWHGAAEX001589/evm.TU.scaffold_110.16
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|46447230|ref|YP_008595.1| | 6.00E-107 | glycogen synthase [Candidatus Protochlamydia amoebophila UWE25] |
| nr | gi|359483436|ref|XP_002269011.2| | 0 | PREDICTED: starch synthase 3, chloroplastic/amyloplastic [Vitis vinifera] |
| Swissprot | tr|Q43846|SSY3_SOLTU | 0 | Soluble starch synthase 3, chloroplastic/amyloplastic (Precursor) |
| trEMBL | tr|A0A067JDD5|A0A067JDD5_JATCU | 0 | Uncharacterized protein {ECO:0000313|EMBL:KDP20743.1} |
| TAIR | AT1G11720 | 0 | starch synthase 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000110 | 579544 | 654128 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001589
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF16760.4 | CBM53 | 302 | 381 | 1.70E-14 |
| PF16760.4 | CBM53 | 477 | 561 | 1.00E-16 |
| PF16760.4 | CBM53 | 638 | 723 | 2.00E-15 |
| PF08323.10 | Glyco_transf_5 | 734 | 925 | 3.40E-45 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CBM53 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00703 | glgA | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Starch and sucrose metabolism | map00500 | ||
| Biofilm formation - Escherichia coli | map02026 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:2001070 | Molecular Function | starch binding |
| GO:0004373 | Molecular Function | glycogen (starch) synthase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 14.060 |
| SRR2545915 | Juvenile tuber | 12.150 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 21.180 |
| SRR5643514 | five period of Gastrodia elata | 29.490 | |
| SRR5643515 | five period of Gastrodia elata | 19.860 | |
| SRR5643524 | five period of Gastrodia elata | 26.530 | |
| SRR5643525 | five period of Gastrodia elata | 13.540 | |
| SRR5643528 | five period of Gastrodia elata | 8.200 | |
| SRR5643658 | five period of Gastrodia elata | 5.360 | |
| SRR5643659 | five period of Gastrodia elata | 14.900 | |
| SRR5643660 | five period of Gastrodia elata | 14.890 | |
| SRR5643661 | five period of Gastrodia elata | 14.410 | |
| SRR5643662 | five period of Gastrodia elata | 18.560 | |
| SRR5643663 | five period of Gastrodia elata | 16.850 | |
| SRR5643664 | five period of Gastrodia elata | 11.880 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.740 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.660 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.150 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.680 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.480 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.460 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.350 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.190 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 17.840 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.970 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.760 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.760 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.43 |
| Juven | Juvenile tuber | 19.58 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 13.28 | |
| Mother_Juven | Mother tuber of Juvenile | 16.10 |