Detail information of GWHGAAEX001592/evm.TU.scaffold_110.20
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|124502516|gb|ABN13632.1| | 0 | polyphenol oxidase [Doritis pulcherrima x Phalaenopsis hybrid cultivar] |
| Swissprot | tr|P43309|PPO_MALDO | 0 | Polyphenol oxidase, chloroplastic (Precursor) |
| trEMBL | tr|A3F9I9|A3F9I9_9ASPA | 0 | Polyphenol oxidase {ECO:0000313|EMBL:ABN13632.1} |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000110 | 818882 | 821169 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001592
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00264.19 | Tyrosinase | 144 | 352 | 7.50E-34 |
| PF12142.7 | PPO1_DWL | 357 | 406 | 2.90E-26 |
| PF12143.7 | PPO1_KFDV | 431 | 552 | 2.90E-34 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00422 | E1.10.3.1 | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Tyrosine metabolism | map00350 | ||
| Isoquinoline alkaloid biosynthesis | map00950 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0046148 | Biological Process | pigment biosynthetic process |
| GO:0004097 | Molecular Function | catechol oxidase activity |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.350 |
| SRR2545915 | Juvenile tuber | 12.630 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.480 |
| SRR5643514 | five period of Gastrodia elata | 18.680 | |
| SRR5643515 | five period of Gastrodia elata | 10.500 | |
| SRR5643524 | five period of Gastrodia elata | 15.230 | |
| SRR5643525 | five period of Gastrodia elata | 47.910 | |
| SRR5643528 | five period of Gastrodia elata | 9.000 | |
| SRR5643658 | five period of Gastrodia elata | 2.080 | |
| SRR5643659 | five period of Gastrodia elata | 32.480 | |
| SRR5643660 | five period of Gastrodia elata | 25.570 | |
| SRR5643661 | five period of Gastrodia elata | 49.010 | |
| SRR5643662 | five period of Gastrodia elata | 22.340 | |
| SRR5643663 | five period of Gastrodia elata | 29.970 | |
| SRR5643664 | five period of Gastrodia elata | 33.090 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.420 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.460 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.360 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.090 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.560 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.250 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.400 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.370 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 28.250 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 21.270 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.970 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.970 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 17.51 |
| Juven | Juvenile tuber | 20.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 200.08 | |
| Mother_Juven | Mother tuber of Juvenile | 142.48 |