Gene detail

Detail information of GWHGAAEX001594/evm.TU.scaffold_110.25

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|672118161\|ref\|XP_008782281.1\|	PREDICTED: DELLA protein SLR1-like [Phoenix dactylifera]
Swissprot	tr\|Q945J4\|DWRF8_MAIZE	DELLA protein DWARF8
trEMBL	tr\|A0A096SEH1\|A0A096SEH1_MAIZE	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GRMZM2G144744_P02}
TAIR	AT1G14920	GRAS family transcription factor family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000110	1034984	1037368	-

Transcript Sequence
>GWHTAAEX001594 TACTATATCAAACAATATATTTGGGCTGGCAAGATCGTAATTTTGTTGCGGATTTAGTCACATATTTTGGTTCAAAAGTGATTACAGTATTTCAACTGAATTGAGAAGATTGTCAACTCTAAGAGTCTAAGCTTAAGAGAAGAAAATGAGTCACATAATGGGCAATAGGAATCAGTAGTGCTGCTCTGCGATTAATATCATTAATACGCTTTAGATCACCCTCTAATTATATAATCATTGATTTGTTCCTCCTTAATTCCTCGGGTAGAATTTCGCCCGTCTGCCTATTATATTCCCCGCTGCCCACTCTTATAATTCAATTCGACTGGCTATCTCTCTTTTTTTCTCTCCAACACCCCCATCTTTCAGTTTTTGCACCAGCTGGAAAAATTTTGTGCAGCTTTTTCAATTTTCTATGAAAGGCGAACGACGCAGCTTTGCTCCTTGAAAGCGGAAGCCCCGTTGGCCAAGCTATGAAGAAGGAGCGCCTGATGGACGGCGTCGGAGGAAGGGGGATTGCCGGCTGTACGGTAGCGCCGGGAAAAGGCAAGGCGGTAGGGTTAGAAGAGGAGAGGGACGCCGGCATGGACGAGCTTCTTGCTGCGGTCGGGTACAAGGTGAGGTTCTCTGACATGGCGGACGTGGCTCAGAAGCTTGAGCAGCTGGATATGGCGATCGGGTGCAGCAGCGCTGCCCAGGACGATGCCCTTCTCACTCACCTCGCTTCTGATACCGTCCACTACAACCCCTCCGATCTGTCCGCTTGGCTCGAGAGCATGCTCTCCGAGCTGACCGCGCCTCCGCCTGCTCGGCCGACTAATCCTGGATCTGATCTCCGGATGGAGAATGGATCCCGAAATCGCAAACGAATGAGATCTGCTTCCTCGTCCTCTTCCTCTTTCAGGCCGCAGCAGCTGCCGCAGTCTGCATCGGAAGCGGCTTCTGCGGAGCCCTCGGTGATGCTGCTGGACGCACAGGAAATCGGAATCCGTCTGGTCCACGCCCTGCTCGCCTGCGCCGAGGCTCTGCAGCAGGAGAATCTCAAGGCTGCGGACCTCCTCGTCAAGCAGATCTCAATCCTTGCCTCTTCTCAAGGGGGCGCGATGCGGAAGGTCGCCAAGTACTTTGCGGAGGCCCTCGCTCGCAAAATCTACGGATTCCAGCTGCAGCAGGACTCCGCTCTCTCCGCCCTCCTTCAGATGCACTTCTACGAGAGCTGCCCCTACCTTAAATTCGCCCACTTCACAGCCAACCAGGCCATCCTGGAAGCCTTCGTCGGCTTCCGCCGCGTCCATGTCGTGGACTTCGGCTTGATGCAGGGGATGCAGTGGCCCGCCCTGATGCAGGCGCTCTCCCTCCGGCAAGGCGGGCCGCCGTCCTTCCGCCTGACTGGGATATCCCCACGTCATTCGGCGGCAGATGAACAGGTCGGCTGGAAGCTCGCCCAGTTTGCCGACGCCATCAACGTCGGCTTCGAGTACCGCGGGTACGTTGCCGGCAGCCTCGCAGACGTCGAGACATTCATGCTGGAGACCGCCGAGGCGGAGGCTTTGGCAGTCAATTCCGTCTTCGAATTGCACCCCCTGCTGGCCAGGCCCGGGGCGCTGGAGAAGCTCCTGGCCGTCGTTCGTGCGGCGAGGCCGCGCATCGTGACCATTGTGGAACAGGAGGCGAACCACAACGCCACCGGGTCCTTCGTCGGGCGGTTCACGGAAGCGCTGCACTATTACTCGACGATGTTTGATTCAATGGAGGGCGGCGGGGGGGAGGGGCAACAGGACCGGGTGATGTCGGAGATATACCTCGGCAGGCAGATCTGCAATGTGGTTGCCTGCGAGGGGCCAGAAAGGACGGAGCGGCACGAGACGCTGGCGCGGTGGAGGATGAGGATGGCCGGTGCGGGATTCGAGGCCGTGCTTCTCGGATCCAAAGCTTTCAAGCAGGCCAGCATGCTGCTCGCCCTCTTCGCTGGCGGGGACGGGTACCGCGTGGAGGAGACGGAAGGCTGCCTCACCCTTGGATGGCACACCCGCCCGCTCATCGCCGCCTCTGCCTGGCGCGTAGCCGATTCTCGCTGAACAATCCGTCCGTCGATTCCGCGTTTATGTGCTGCTCTGTTGTTCTGTTTGTTGTTGTGTTGTTGATGAGAAGCCTGTTTCGAGGGCATGCCATGCATCTGATTTGTTTGTTCATCCTTTTGTGCATATGTAAAATAGTGTAATAAAACTCCAATTGCGGATTTTTATTACCCTTTGTGTATTATTTATTGAAAGTTTTGGGGGCCATGGCTTGGTAGTTGTATCCACTTCCCACTATGAAATTGTCTATTTCTCAACATGAAATTGTTTCAAGACATTTGATAAAGAAAAATGATATGCATCATCT

Network for GWHGAAEX001594

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12041.7	DELLA	39	110	2.20E-32
PF03514.13	GRAS	174	529	2.50E-128

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	pathway	mapID
K14494	DELLA	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	32.000
SRP064423	SRR2545915	Juvenile tuber	28.950
SRP108465	SRR5643513	five period of Gastrodia elata	126.490
	SRR5643514	five period of Gastrodia elata	138.500
	SRR5643515	five period of Gastrodia elata	91.480
	SRR5643524	five period of Gastrodia elata	116.920
	SRR5643525	five period of Gastrodia elata	172.850
	SRR5643528	five period of Gastrodia elata	163.550
	SRR5643658	five period of Gastrodia elata	145.970
	SRR5643659	five period of Gastrodia elata	75.200
	SRR5643660	five period of Gastrodia elata	73.470
	SRR5643661	five period of Gastrodia elata	85.070
	SRR5643662	five period of Gastrodia elata	91.580
	SRR5643663	five period of Gastrodia elata	82.220
	SRR5643664	five period of Gastrodia elata	115.930
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	124.910
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	91.680
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	114.970
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	166.740
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	146.750
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	184.110
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	141.400
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	130.280
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	101.040
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	115.610
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	106.350
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	106.350
SRP279888	Gastro	Gastrodia elata tuber	59.94
	Juven	Juvenile tuber	105.14
	Mother_Gastro	Mother tuber of Gastrodia elata	223.93
	Mother_Juven	Mother tuber of Juvenile	96.10