Gene detail

Detail information of GWHGAAEX001595/evm.TU.scaffold_110.28

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695077554\|ref\|XP_009386123.1\|	1.89E-61	PREDICTED: phospholipase A2-alpha [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q8S8N6\|PLA2A_ARATH	8.00E-56	Phospholipase A2-alpha (Precursor)
trEMBL	tr\|M0U6Z4\|M0U6Z4_MUSAM	8.00E-62	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP06830_001}
TAIR	AT4G29460	2.00E-17	Phospholipase A2 family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000110	1096998	1098784	-

Transcript Sequence
>GWHTAAEX001595 GGACTAACAAAATTTGAGCAAATAAAGCATAGCCATTTAGGTGAAAATAAATGAGAATCGAATAGAATAGAAAACACAGATATAAAAGTTAACTAGAAAACTTTAATTATGCATCATTAATCCTATGATAAGTTCAATATTTAGTAGAATAATAGTCTTCGAGTGATAACAGTAGCAGAGTTGATAGCTACGAGCATAATGGGGCAATTCTGGACCATTGGATGAACACCTGGTGTGGATCCTCTCTCATCGTCAGATGATTGAAAATGTGAAAGCTTATTGACTGTTGGATTTAAATTGATCTCATGATCAACCACTACCATTAATCCAAAACTAATTAATACTTCATCGATGCAGCTCAATCCATAACAGTGATGCCATGCCGTCTTCCTCTGGATTAACATATCCTAAACACACAAAAATATTCTTCAATTAAGGCTTCATCAAAACTTGCTTAATTCTTAAACTCTCTTAATCAAGTTTTTGTATTTATAAAGAGCTTAAATAGTGTGATATAGTGAAATATAAGAACAAAAAAAGAATTTTCCTTAAAAAGACAAAAACAGAATGGAGCACAGTTCATTTACTCTCCCAGCACCAAAATCTCGTCTCCTTCCAGACCAGCTACATGACACCGACTCGTCACGAGCGAAAAGAGGAATCAAAGAAAACCGGACAAACAAACTCCTCACTTTAACCCATAACTACTTCACCCCCCTCGCATTGATTGCCACAGCATTTCGAAAATACGCATCAGATGGGAGCCAAATCAAGAGAACTCCTCTTCCTCTACCTCCTCCTCTCCCTCTTCCTCCCCTCCTCCCAAGCTCTCAACATCGGCATCCTCTCCGACAGCACGGCGGTCTCCCCTTTCTTATTCCCCTGTCTTTGCTTCTCATTTCCCCTCTAACCTTTCTTCCCATTTTGAAACAGAGCAAGCGGGAGTGCAGCACGAAGTGCGAGTCAGAGCACTGCACAGTGCCGCTTTTCCTGAGATACGGCAAGTACTGCGGGATTATGTACAGCGGATGCCCTGGCGAGAAGCCCTGCGACGGGCTCGACGCTTGCTGTATGGCCCATGACGCCTGCGTTCAAGCCAGAAGCAACGATTACTTGAGCCAGAAGTGCAGCCAGGATTTACTGGACTGTATTGCGAGATTCAGAGAAGAGGACACGCCGTCTTTTCAGGGGAACAAATGCATGGTGCAGGAGGTGGCTGATGTCATTACTGTTGTCATAGAGGCCGCGCTGCTCGCCGGAAGAGTTCTGCATAAACCATGAGGAGATGGCTGCGATCGGGATTCCTCTTTTTTCGTGTTCTGCTTTCGCGCAATAAGTGAGGCGCTCTGCCGACAAAATGTTCGGTAGCTTCTCCCGTCGTCTTATTATTATTATATGCTGCCGCTGTTGGATTGGATTTTTCTCTTTCTTTTGTTTGGTAGGTGCGATTTTCTTTTGCTCGATGCCGATTCTTCTTCCTTTTTTTTTTTGTAAGTATGCTGAACGGTATTGCATCTATTATTATGTAGCAGATGTATTGCTTTAGTGCTTAAAGGAATGAAACACAAGATTGCATTATTTAAATGAAAATAGAGTTCTAATAGCTAAATATAAAATTGATGCTATGATTTATATATT

Network for GWHGAAEX001595

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01047	PLA2G, SPLA2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerophospholipid metabolism	map00564
		Ether lipid metabolism	map00565
		Arachidonic acid metabolism	map00590
		Linoleic acid metabolism	map00591
		alpha-Linolenic acid metabolism	map00592
		Ras signaling pathway	map04014
		Vascular smooth muscle contraction	map04270
		Pancreatic secretion	map04972
		Fat digestion and absorption	map04975

Gene Ontology

GO term	Ontology	Name
GO:0006644	Biological Process	phospholipid metabolic process
GO:0050482	Biological Process	arachidonic acid secretion
GO:0004623	Molecular Function	phospholipase A2 activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.210
SRP064423	SRR2545915	Juvenile tuber	5.440
SRP108465	SRR5643513	five period of Gastrodia elata	41.050
	SRR5643514	five period of Gastrodia elata	57.660
	SRR5643515	five period of Gastrodia elata	36.290
	SRR5643524	five period of Gastrodia elata	42.920
	SRR5643525	five period of Gastrodia elata	9.590
	SRR5643528	five period of Gastrodia elata	12.980
	SRR5643658	five period of Gastrodia elata	7.630
	SRR5643659	five period of Gastrodia elata	17.000
	SRR5643660	five period of Gastrodia elata	7.180
	SRR5643661	five period of Gastrodia elata	8.170
	SRR5643662	five period of Gastrodia elata	5.980
	SRR5643663	five period of Gastrodia elata	14.740
	SRR5643664	five period of Gastrodia elata	5.230
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	18.410
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	33.580
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	30.120
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	12.350
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	13.520
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.780
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	27.460
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.900
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	46.500
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	39.690
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	49.840
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	49.840
SRP279888	Gastro	Gastrodia elata tuber	3.59
	Juven	Juvenile tuber	11.59
	Mother_Gastro	Mother tuber of Gastrodia elata	48.61
	Mother_Juven	Mother tuber of Juvenile	10.92