Gene detail

Detail information of GWHGAAEX001609/evm.TU.scaffold_110.53

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743820590\|ref\|XP_010931820.1\|	PREDICTED: homeobox-leucine zipper protein ROC2 [Elaeis guineensis]
Swissprot	tr\|Q0J9X2\|ROC2_ORYSJ	Homeobox-leucine zipper protein ROC2
trEMBL	tr\|Q40988\|Q40988_9ASPA	Homeobox protein {ECO:0000313\|EMBL:AAB37230.1}
TAIR	AT4G04890	protodermal factor 2

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000110	1894855	1905922	+

Transcript Sequence
>GWHTAAEX001609 CACCACCCTCTCAATAAATGCAATTGCACCTTCTCAATACGCTTCGCAATAACTCCTCCTCCTTCCAAATCTGCTCCTCCTCTCTCCCTTTCTCTTTTCCAACCTTTCCTCTCGTCTCCCATGACTCTCTTCCTGTGATCCATGCTTTATTTTCGCTTCGCTCTTTCCCGGTCTTTATGTATATGTATATATATTAGCTCTTAGCTCAAGTATGGCCGGAGGCATCATGATTCCTGCCAGGAACATGTCGTCGTTGGCTGGAAGGAACTCCGCCATGGGCTATGGAAACTCCTCGGCGCTGACTCTCGGGCAGAACAAAGCGTTGGAGAATGAGCAGGTAATGGAGATGCAGATGCCTACATGCACGGCAGAGAGCGAGGCGGCGAAAAGTCGAGAAGACGGGTTCGAGAGCAAGTCGGAGAGCGAAAATGTTGAGGGAGCGTCTGGCGATGAAGCGGACCCTAACGAGAGGCCGAGGAAGAAGCGGTATCACAGGCACACCCAGCACCAGATTCAGGAAATGGAAGCGTTTTTCAAGGAATGCCCTCATCCTGATGACAAGCAGAGGAAGGAGCTCAGCAGGGAGTTGGGCTTAGAGCCTTTGCAAGTCAAGTTCTGGTTTCAGAACAAGCGCACCCAAATGAAGACGCAGCACGAGAGGCAGGAGAATGGACAGTTGAGGGCTGAGAACGAGAGGCTCCGTACAGAGAATCTTCGATATAAGGAGGTTCTCAGCAGTGTCACTTGCCCAAGCTGCGGCGGTCCGGCCACCATCGGAGATATGTCCTTTGACGAGCACCACCTTAGGATTGAGAATCTCAGGCTCAGAGAGGAGATAGAGAGGATCTCAGGCATTGCAGCCAAGTACGTAGGAAAGCCGGCGCTGTCTTACCCGCTCGTACGCTCTCCTTTAGAGCTCGGGGCAGTCCAGATGGGGTTTGGAGGTGAGCTGCTGAGATCCACCGTACAGCCGGAAGCCATCGACAAGCCGACGGTGATCGAGCTTGCAGTGGCAGCCATGGAGGAGCTCCTCAGGATGGCTCACCTCGGAGAGCCCCTTTGGAGCGTGGGTTCTGATGGGGCTTCGGAGTTCTTGAATGAGGAGGAGTACGTTAGAATTTTTCCGAGAGGGATTGGGCCCAAACCGTTCGGCTTCAAATCCGAGGCCACAAGGGAGACTGCGGTGGTCATCATGAATCACATTAATCTTGTCGAGATTCTCATGGATGCGAATCAGTGGTCAACATTGTTCTCAAGCATTGTATCCAGGGGAACTACGCTAGAGGTGCTGTCTAGTGGAGTGGCAGGAAACTACAATGGTGCCTTGCAAGTTATGACGAGTGAATTCCAAGTTCCATCCCCTCTTGTGCCAACCCGAGAATGTTACTTCGTTCGATACTGTAAGCAGCATCCCGACGGAACTTGGGCTGTCGTCGATGTCTCTTTGAACAGCCTTCGCCCCGGCCCTGTCGCGAGATGCCTACGGAGGCCCTCTGGCTGCCTCATCCAAGAAATGCCTAATGGCTACTCAAAGGTGGTTTGGGTCGAACACGTGGAGGCCGATGACAGATCCGTGCACAATCTTTATAAGTCGCTGGTGAACTCCGGCCTAGCCTTCGGCGCAAAAAGATGGGTCTCCGCTCTCGATCGCCAGTGCGAACGGCTTGCGAGTGCCATGGCTACCGGCATTCCGACAGGAGATATTGGAGTGATAACATCAGCAGAAGGGAGAAAGAGCATGCTGAAGTTAGCTGAGAGGATGGTCATAAGCTTTTGTGGAGGTGTGAGTGCCTCCACAACTCATCAATGGACTACACTATCCGGAAGCGGAGCCGAAGATGTCAGGGTGATGACGCGAAAAAGCGTCGACGATCCAGGCAGACCTCCCGGTATAGTTCTTAATGCGGCCACATCATTCTGGCTGCCTGTCGCGCCCAAAAGGGTATTTGATTTTCTCCGTGACGAGACTTCTCGGAGCGAGTGGGATATCCTCTCTAATGGTGGTGTAGTTCAAGAGATGGCTCATATAGCCAATGGTAGAGACCATGGAAACTGTGTCTCCCTCCTCAGAGTAAATAGCGCAAATTCAAACCAGAGCAACATGCTGATACTTCAAGAGAGCTGCACAGACCTCACCGGCTCTTATGTTATTTACGCTCCCGTCGACGTCATCGCCATGAACGTTGTGCTCAATGGCGGCGATCCAGATTACGTCGCCCTCCTGCCTTCAGGCTTCGCAATCCTGCCGGATGGGTCCGAACGAGTCGAGGGGTGCGGAAAAGAGAATATGGCATTGGGTGGGTCGCTTCTCACAGTGGCTTTTCAGATATTAGTTGATTCGGTGCCGACGGCGAAGCTTTCTCTCGGGTCGGTCGCAACGGTTAACAATCTCATAGACTGTACTGTGGAAAGGATCAAGGCTGCAGTCACCGGAGAGAGTGCTCCTCAGTGAGAACTTATTTGCCCTTTTAGTTTGAGACTACAGCGGAATTTAGAGGCTCGAGGGGGGGAAATGGATTAAGAAAATTTGTTTTTGGAAAACATATGGGAAGATAGTCAAGAACGCACCTCTGACTCTCCTAGCAGCATCATGTGTCTGTCTGTGTTACTTGGGATCAATCAAGCCTAAACATGAAGAGTTGGTTCGGGTATTGACTCTCTCCTTTAATCTCGCCCTCCTCATTTTCCCTCTCTTTGTAATTTTGCACCCTTATAAAGAACATTAGAACTTTCCACGTTCCTTGTTATTGCACTTAGTTGCTGTATTTCTTGAATCCCTTTCTATAAGACTCGTTTAATTATATAATTAAGTGCGTCAAATTCAAGCTTAGTCATTCATGAGCCTGCTTGAAGACATTTGTGTTTTAGATAATATTCTGCCGTTTACTAAATTTTCTTTTAAAT

Network for GWHGAAEX001609

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.28	Homeobox	90	145	4.30E-18
PF01852.18	START	265	484	1.50E-54

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-HD-ZIP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0008289	Molecular Function	lipid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.080
SRP064423	SRR2545915	Juvenile tuber	6.390
SRP108465	SRR5643513	five period of Gastrodia elata	8.460
	SRR5643514	five period of Gastrodia elata	6.950
	SRR5643515	five period of Gastrodia elata	4.040
	SRR5643524	five period of Gastrodia elata	9.560
	SRR5643525	five period of Gastrodia elata	7.670
	SRR5643528	five period of Gastrodia elata	2.340
	SRR5643658	five period of Gastrodia elata	6.730
	SRR5643659	five period of Gastrodia elata	1.240
	SRR5643660	five period of Gastrodia elata	0.230
	SRR5643661	five period of Gastrodia elata	0.210
	SRR5643662	five period of Gastrodia elata	0.000
	SRR5643663	five period of Gastrodia elata	0.020
	SRR5643664	five period of Gastrodia elata	0.090
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.840
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.390
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.480
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.320
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.480
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.440
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.300
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	14.090
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.950
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.970
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.000
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.000
SRP279888	Gastro	Gastrodia elata tuber	0.03
	Juven	Juvenile tuber	1.40
	Mother_Gastro	Mother tuber of Gastrodia elata	0.08
	Mother_Juven	Mother tuber of Juvenile	0.81