Gene detail

Detail information of GWHGAAEX001616/evm.TU.scaffold_110.62

Functional Annotation

Database	Orthologs	E value	Annotation

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000110	2154145	2177138	-

Transcript Sequence
>GWHTAAEX001616 ATTTTGATATTGAGGCAGATGGCCTTCAGGGGAGTGCTCTTCACGATAATGGATTTGCCTATTGTTGGTCTGGCGCTAGAGCTGATGTCGGCATAAAGGGGGGGAAATATTGTTTTGGTTGTAAAATTATTTCTGAGCAGGTTGTTAATATGGTTGACACTCCTTCCGATCAGCAACATTTGTCTCGCGTTGGAATATCCAAAGGGGATGATTCTGTTGGAAGTCTTGGGGAAACTGTTCATAGTTTTGGTTTTGGAGGTACTGGAAAATTTTCAAATGCAGGGAAGTTTTTAGAATATGGTGGCAAGTTTGGTGTTGGCGATGTAATTGTCTGTGCTGTTGATCTTGAGAAGAAACCGCTGGCGACAATTGGATTTTCAAAGACTGGGAGATGGATGGGTATTGCGAAGGAATTTGATGCGAACTCAAAGGAATTCGGCATTGTTGATACTCCAGTGAAGAAACTTTACTGGGAGTCAGCATTTTTTCCTCATGTCTTACTGAAGAATGTTGTTGTACAACTCTTATTCAGTGTCAGTGATGGATTGATACCCATGGAAAGCTACAAGCCATGGAATTTGGCCATTGAAGATGGAAATGCAATATTTGGTCCAACCTTTTCAAAACCAGAGGAAAGTGAGGTTTTAATGATGGTTGGTTTGCCAGCATCAGGCAAAACTACCTGGGCTGAAAAATGGGTGAAGGATCATCCGGAAAAGCGCTATGTGCTGCTTGGAACCAATCTTGCTCTTGATTTAATGAAGGTACCTGGGCTCTTGCGAAAGAAAAATTATGGTGAGCGGTTTGATCTTCTGATGGATCGTGCTACAGGAATATTTAATACATTGCTAACAAGAGCTGCTAAAAGTCCACGCAACTACATTCTTGATCAAACAAATGTTTACAAGAGTGCCAGAAATCGTAAACTGAAGTCTTTTGTGAAATACCACAAGATAGCAGTGGTTGTCTTTCCCACGCCAAAAGAGCTAATGTCTCGAGCAAGAAAGCGATTTGAAGAAATGGGGAAAGAGGTTCCTGCAGATGCAGTGAATGAAATGATAGCCAACTATGTCTTACCTACGAGCAAAGATATGCCTGGTTCTACTGAGCCATTCGATGAGGTCATATTTCCAGAACTCGGCAGAGACAAGGCGCAAGGTCATTTGGATGAAATGAAGCGTGCACGTGCATTGTCTTCTAATAAAAACATAAAGCAGGAATTTTCTTCTCTGTCTCGTGAAATACCTGCACAATCATTTCCTAGACCGTTGGTTGCTAATGAAGAACCTATAACAGATTTTGAACGACACAGACAGATTCAAGCCAATGTGCTATTTTCAGATTTTTCGAGCTTATCCCATGCTATTCCAGCAGCATATGGCAGGCCTACTTTGTCTTCTGCGCACCATTCAGGAGCTGTTGACCCTAACTTTGCTTTGTATTCGAAATCAACTGGTGAAACTACTGGATGTAAGAATCTTCAAGGCACTGCGACTTCATATCACAGAAGTGACAATGATTACTTTGGAAGCTATGATAGGACACCAGCACCACTTCATCGAAGTGCAAATGACTGCTATGGGAATTATGGCGGGGGCACATCATTTCAAAGAGGTGAATTTGATCTCCACAGTGTGAGCACAGCTTCTGATTTATATGATAGAAGCTCTTTTGGAAGAAGTAGTGAAATGAGACCATACCAGACACCAAGGTCAGCTAATATGTTTCCGAGAACAGAGTTTGAGAGCCCCATCGGCGTTAGCAGGCCTTATGGATACTCATCAACTACGTCATCTTATGGTGGCAGTCATGGTGGACAAGTTCATGATCTTGGAGCTCAGTTTAATCGCCATTCTTCATTGATGGATCGATATGATGGAATGCACTCTCAAACACTTTATGGATCTTATGCTGCAACGCCGTCACCCAGATTTTCTCCTATGGCACGTGAAGTTCGTCCACGTATAGATTACCCCCCTCATACATGGAACCGTTGA

Network for GWHGAAEX001616

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	35.470
SRP064423	SRR2545915	Juvenile tuber	46.370
SRP108465	SRR5643513	five period of Gastrodia elata	24.940
	SRR5643514	five period of Gastrodia elata	29.090
	SRR5643515	five period of Gastrodia elata	26.270
	SRR5643524	five period of Gastrodia elata	29.400
	SRR5643525	five period of Gastrodia elata	32.080
	SRR5643528	five period of Gastrodia elata	33.780
	SRR5643658	five period of Gastrodia elata	40.910
	SRR5643659	five period of Gastrodia elata	17.380
	SRR5643660	five period of Gastrodia elata	18.730
	SRR5643661	five period of Gastrodia elata	15.510
	SRR5643662	five period of Gastrodia elata	19.600
	SRR5643663	five period of Gastrodia elata	19.180
	SRR5643664	five period of Gastrodia elata	17.650
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	31.880
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	37.400
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	28.720
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	32.270
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	31.130
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	41.680
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	33.720
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	35.320
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	30.050
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	29.390
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	32.650
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	32.650
SRP279888	Gastro	Gastrodia elata tuber	23.90
	Juven	Juvenile tuber	37.79
	Mother_Gastro	Mother tuber of Gastrodia elata	33.83
	Mother_Juven	Mother tuber of Juvenile	50.52