Gene detail

Detail information of GWHGAAEX001624/evm.TU.scaffold_110.72

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2073	SAP family cell cycle dependent phosphatase-associated protein
nr	gi\|743803573\|ref\|XP_010926954.1\|	PREDICTED: serine/threonine-protein phosphatase 6 regulatory subunit 3-like isoform X1 [Elaeis guineensis]
trEMBL	tr\|C5XPF3\|C5XPF3_SORBI	Putative uncharacterized protein Sb03g026240 {ECO:0000313\|EMBL:EES00974.1}
TAIR	AT2G28360	SIT4 phosphatase-associated family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000110	2549999	2607797	-

Transcript Sequence
>GWHTAAEX001624 CTTCTGTCTAAACAAGTTTATGGGCTAGCTTAAATTAATATCCACGTTGGTTTTTAGAAATTGATAACCTAAATTTTACTAAAATAGTACGTAAAAAGTGCTCCCGCTCCAATGCAAATGGCAGCAATTAACAGCGCATAATTCCGATTGAAATTTTTTTATTGCAGCACTCCCATTCTACGATTTTTAGAAAGGAAAATCTGCCGTCTCTCTTCGCCTTCCTTTTTCCCACATACATCTTTCATTGGTCTGATATCCATTACAATGGTATATTAGAGGACGGTGGTCGCATCTGAGGATTCGGATTCTAGGTTTTCAAGGAATCTGTCTCGCATGACAGTTGACAGTGGTGGAGATTCCGTGCCGACATAGCCGCAGATTAGAGTTTCAGTTCCCGATCGATCATTCGTGATCCTTCGATTAAGTTAAGTCAAGATGTTCTGGCGTATGTCTGGGTCTCCAGCGACTTCGCCTGTGGATAATATATTGGACAAGCAGAATTGTACTTTGGAAGAGCTGCTTGATGAGGATGAATTAATTCAAGAATGCAAGGCGTTGAATAGTCGACTAATTAATTTTCTTCGTGAGAGAACTCAAGTTGAGCAATTGCTTCGTTTTATTATTGAAGTCGATCCAGAGGAAGCTGAGAATAAGGAAATTCTAAAGTTTCCCTTCATTGCTTGTGAAATTTTTACTTGTGGGGTCGATATAATATTACAGACTTTGCTTGAGGATGATGAGTTGATGAATCTGCTGTTTTCTTTCTTGAAACCTGATAACCTGCATAGTACGATTTTGGCGGGTTATTTCAGCAAGGTTGTTTTATGCTTGATGCAAAGGAGGACCGCACAACTTATGAGTTATGTTCAGGGCCACCCAGAAATATTCCATCAACTTACTGATCTAATTGGTATCACGTCAATGATGGAGGTATTGATTCGTTTAATTGGAGCTGATGAATATATGTATTCAAACTATTCAGACGCATCACAGTGTGTAGATGCCACTGATGTGCTCGACTTGATTGTTGATAAGTTCTATTCTTCGGATTCATCCGAAGTTCACGCTAATGCAGCAGAAGTTCTCTGTGCAATAACTAGATATTCTCCTCCTGGACTAGCTGCAAAGGTTTGCAGCCCAAGTTTTGTGGGAAGGCTATTTCAACATGCACTGGAGGATTCACGTCCGAAATCCGTTCTGATTCAATCGTTGTCTGTATGCATTTGTCTTTTGGATCCTAAGAGATTACTACAATCTTCTTATCAATCATTTAGAAGCCACTTAAGCCATGGAACAGTTGTAATTGCTAGTCCAGAGACTGTTGATCGCATGCTAGAGAAACTAGGATCTTTGTTGAAGATCTTGGATGATGACGCTTCAGATGTTGCCCTGCCTACCACCTATGGTTACTTGAGGCCTCCTCTTGGAAAACATCGTTTGAAGATTGTGGAGTTCATTGCTATTTTGTTCACACTTGGAAGTGAAGAGTCTGAGAAGGAGCTTATTCGTCTAGGAGCTTTGAAACAGGTCCTAGATTTATTTTTCGAGTACCCTTATAATAATTTTTTGCATCACCGAGTGGAAAATATCATAGACTCCTGTTTAGAAAGCAAGAAAGCATACCTTGTGGAACATGTCCTATATGATTGTGACTTTGTTGGTAAAATTCTTCAAGCCGAAAAACGGGCTGAACTACAAAGGGATTGCAACAAGCCAACAGTATTGGCACAAGGAAGACCTTCTCCAAGGTTTGGCAATATAGGTCATCTGACACGTATAGCTAACAAACTTGTTCAAGGAGCAAATAATTATGCAATACTACAAAAACACCTGCAGGAAAACAGCGAATGGGTGGATTGGCATGCAAAGGTTCTTGTCAAACGAAATGCACTGGAGAATGTTTACAATTGGGCGTGTGGGCGCCCAAATTCATTTAATGATCGAGCTAGGAATAGTATTAATGAAGACTTTAAAGATAGAGATGATGATGTGGCAGTGTTGGCTAGCAACTTGAGCCAGGCATTTCGGTACAATATGCATGGTGATGATGACATTGGAGAGACTCCAGGATCACATGAGCAAGATAATGAGGATATGTACTTTGATGATGAATCTGCAGAAGCTGTAATTCCATCCTTGCGTTTGGGTGATGATCAGGAAAGTTCACTGTTCACAAACTCAAACTGGTTTGCTTTCGAAGAAGACCGAAATGCTGATGAGGATCCATCCTCTTCTTCGCCCCTCGCTTCGCCATCACGAAATTCGATTCATCACATCAACGAGGCGGCTGACGGAGTCAATGAGGATCCTACTTCCTCACAAATGCCGGATTCAAGCAGCCCTCCTCAGGATCGCCAGAATTTGATCCCACCGACCCAAAATGCGAATCCATGTGATTGGGCTGTACAGAGCGAGTATCTGGAATCGGGCAGCAGCCCGCACAGCACGAAGGCAACTGAAAATACACAGAATGCAGGCATTTCATTGAACGAGGGCCATCATACCGAATCCGAGGATTCCACTCCAATTGGTGTTGCCGATAATCCCAAACTCTGCTAAAGAAATGGAAGATGAAACTAACCTGACAGGATTTGTATTTGTTTGTAAGAAGATGGAACTTACAGATAATATATAATAATAAGGGGGCCAGCAATGATTTTTCATTTTATGTATCTGTACAAAATAAGGATGTTAATTCTTTTTGTATTTTGACGATCTTTCATGTAGGTATTCTTTTTAATATTGTTGTTTTTTTAGCAGGCGGTCACATTACAAGAAGCAGAACTGGAGGTGACAATTTACTGTTTTTATTTATAATGTTTGGAACAATGCACCTCATCGTTGCACATTTTGATAGTAATTGAATAAAAATGTTGTGTTCGATTTGCAGTAATCGAG

Network for GWHGAAEX001624

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04499.14	SAPS	131	345	2.80E-27
PF04499.14	SAPS	355	488	1.60E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0043666	Biological Process	regulation of phosphoprotein phosphatase activity
GO:0019903	Molecular Function	protein phosphatase binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	18.550
SRP064423	SRR2545915	Juvenile tuber	22.070
SRP108465	SRR5643513	five period of Gastrodia elata	10.940
	SRR5643514	five period of Gastrodia elata	12.750
	SRR5643515	five period of Gastrodia elata	11.740
	SRR5643524	five period of Gastrodia elata	10.910
	SRR5643525	five period of Gastrodia elata	10.430
	SRR5643528	five period of Gastrodia elata	12.710
	SRR5643658	five period of Gastrodia elata	13.020
	SRR5643659	five period of Gastrodia elata	10.360
	SRR5643660	five period of Gastrodia elata	10.880
	SRR5643661	five period of Gastrodia elata	9.860
	SRR5643662	five period of Gastrodia elata	9.220
	SRR5643663	five period of Gastrodia elata	11.120
	SRR5643664	five period of Gastrodia elata	11.380
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.380
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.790
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.220
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	12.890
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.000
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	13.580
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.070
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.430
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.070
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.210
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	13.430
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	13.430
SRP279888	Gastro	Gastrodia elata tuber	13.30
	Juven	Juvenile tuber	12.88
	Mother_Gastro	Mother tuber of Gastrodia elata	21.30
	Mother_Juven	Mother tuber of Juvenile	25.76