Gene detail

Detail information of GWHGAAEX001625/evm.TU.scaffold_110.74

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0007	0	Splicing factor 3a, subunit 1
nr	gi\|672122473\|ref\|XP_008784569.1\|	0	PREDICTED: LOW QUALITY PROTEIN: calcium homeostasis endoplasmic reticulum protein-like [Phoenix dactylifera]
Swissprot	tr\|Q8GXN9\|TGH_ARATH	1.00E-07	G patch domain-containing protein TGH
trEMBL	tr\|F6H1T4\|F6H1T4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46153.1}
TAIR	AT4G31200	0	SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000110	2688278	2705457	+

Transcript Sequence
>GWHTAAEX001625 TTAAGTTTTAATTTTCAATATAGCTTATATTATTTTTCACGGAATTCTCTCCGTCCCTGAGGCGCTTTTTCCAGTGCGATGTATCCTGCGATCACTCCTCTCCTCCAGATTAGGTTTTTGGAGAAACCTGTGATCTCTTTCCTTCTCTTCCGGCTCAGCCCTTATTTTTTCAATTGAAGAACTCTGCGACCTTCTCTCCTCTCCTCTCCTCCTGAGACATACCTTCCCCTCCTTCGGCTATGTTGTCTATTTACCCTTGTTCCTCACATTTGCGGGATTTTATGTGCTAACGGAGGATTTGAATTTACGTTAAATCTCTCGTTATCCGTATTTCCGTTGAGGATTTTTACTCAAGTATATCCTGCGTAAATCCTGCAACCATACAGGTTGTCATCAGTACGAATTGGAAGTTGGGTTGTTTTAGTGATTATTTGGATTTGTATTGTTGGTATATTATTCTTTTAGCAGTTTCCACAAATGGATAGACAATCTCATGACTATGCTGCTGCAATGGCTTTTGCTCAGCAACAGCAGCAACAAGCCAATATTCAGCAGCAGCAACAATTTGCTTTTCATCCACAAGCCCCACAGCATCCTCAACAAATGCATGCGCCACCTTTCATGCCTCCTCACCCTTCTATTCAGCAGTACCCTTACCATCATCGCATGCCTCAACAGCAGCAGCAGCAGCAGCAGCAAATGTATCCACACCCACCCCATCCAATGCTTCATCTTCAACAGCAGCAGCCACCATCCGTTTACCCACCTCATCTACCCCCACATCTCTTGCGCCCTCCAATGATGCACCCATATGACCCGACACCACCTCCTGCAGACCCTGAACTTCATAAGCGAATTGATAAGTTAATTGAGTATGCTGCTAGAAATGGGCCTGAATTTGAAGCTCTCATACGTGAGAGGGAGCAGGACAATCCTGCTTACAGTTTTCTTTTTGGAGGAGAGGGGCATAATTACTATCGCTATAAGCTGTGGCTATCCACAAGACAAGGTCCAGCTTTTAGCCCTCCATTTACTTCTTCAATTTCAATGATACCTCCGCCACATAATCCCATGCTAAATTCTTCTTCTTTGAGTCCTTTGGGTGCTGCGGCCGGAGGTCCAGGATCGATGCTGCCAGGTCCTCAATCACACCAGCCTTCATATCCTCCTTATTTTGACCAGCATCAACATCCACCACATCCCCAAGGTTTCTTGGGTCAAGTTCGTGTTGACTATGAATCATCTATGAAAACTTTCAAGGGCTTGTCTGGGCCACTTCCTGCTGATGTTGCTATGGAGCTTAATAGTGTGCTTAGCAATCTTACTGGAACTAAGGAGTCAATAAAGGGTGCAAAGATGTGGTTTATGCAAAGGTCACCGTTTGCACCAGCTTTAGCTGATGCTCTTAGAGACAGAATATTTTCTCTTGAAGATTCAGAAAGGCAGCTTCACATAATTTTCTTAGCAAATGACATTCTATTTGACAGCTTGCAACGGAGATCAAATCCCCTTGATCTGGATAATGAAGCACTTGCATTTAAACCTGTTTTGGGAACCATGCTTGCAAGAATTTATAACAACCCCCAAAATATGGATGCTAATCGCAGCCGATTGGAGAAAATCCTACAGTTCTGGGCTTCAAAGGAAGTGTACGATCAGGAAACCATTGCTAATTTGGAGAAAGAAATGACTGGCAGTCTACCGTTGGGCTACTCTTCACAAAAGGAACATTCTTGCGGATTATTAGAGTCCGCTAACATTACAGGGAACACACTCCCCGAGTGGCAATCTGACAAGCAGAACCTAGTAGATATTCCGGATCATGAGAAGCAACAGAGCAGTGTTTCAGTTCCAACAGCCCAATTTCTGCCCACCGGCGGCACTACTCAATTTCTTCCCAACCAACTTCCCACAGGGATTTACCAAAATCTGCCCCAGACTTCTTTCTCAGGGATTTTACCAGTCCCAAACCCTTCTCAAACCCCAGCCCAGTCTAACAGTATTCTTCTGCCTTCTGCCGCACCTGTCCTTGGAGACAAAGCCCCTCCGCCTTACCCTCTCTTCCCTCCCGGTCTCATTCCAGGAATGGTTCGCAAGATGCAGATCGGCAGCGGCGTCCCATACTCTCCGTTGAGCCCTCTCGATATCCCTACTGTCATCCCACCTTCCAATATTCAACCCTCTGAAATCCTTGAGAGGGTATCCAAGTTTTTCAAAGAGATCGGGGAGGTGAACCCCTCAGATGGGCCTGTGATTTCCTCGGAGCCGAATGACGATGAATTTGAATATGATCGAGAGCCCATTGTTCGTAAGGGTGGCGCTTGTATACCGCCGCCGCCAAATCTACAGGTGGACCCGGAAACCGGCACGTATCCTGATGGGACTATTGAGCGCAAACCGGGATCGACCAGTACTGGGAGACTGGGAGTTGGTGCAACTGCAGACCCTAATGAAGTCAGCCAGTATGATGATGTCTATACTTCGTACAGGAAGCAAAGGAGCACCAGCTATCATTCTTCAATGAGTGCAAGATCTACCAGGTGAGTAAACTCTCTCTTTTCTTTGAAGTTATTCAATTTTAAAATTTAGGGTTTAGGGTTTGGTAGGGTTTTGTTATGTGAAAGATACATAATATTGTAGCTGACTTGACTGAAATTTTAATCTATTTAATTTTTTTTTTCTTTGGGAGAGATGCTATGATGTGCAAAAACTACAATCCTATCTCTCACATTGATGAATCTTCTGCTTCCAGATCTCTCACTATTCAATAAATTTATCAAATGTAAATAAATGAAAAGATGTATGAAAAGCATTAAAACTACTCTTTTAGCTACTCTAAATTTAATTAATTGAAATTGTTAGATAGGCG

Network for GWHGAAEX001625

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01805.19	Surp	126	172	1.60E-13
PF04818.12	CTD_bind	323	392	4.70E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006396	Biological Process	RNA processing
GO:0003723	Molecular Function	RNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	47.240
SRP064423	SRR2545915	Juvenile tuber	37.440
SRP108465	SRR5643513	five period of Gastrodia elata	25.710
	SRR5643514	five period of Gastrodia elata	27.460
	SRR5643515	five period of Gastrodia elata	24.330
	SRR5643524	five period of Gastrodia elata	25.380
	SRR5643525	five period of Gastrodia elata	24.690
	SRR5643528	five period of Gastrodia elata	27.670
	SRR5643658	five period of Gastrodia elata	31.120
	SRR5643659	five period of Gastrodia elata	33.250
	SRR5643660	five period of Gastrodia elata	37.320
	SRR5643661	five period of Gastrodia elata	34.450
	SRR5643662	five period of Gastrodia elata	38.230
	SRR5643663	five period of Gastrodia elata	34.360
	SRR5643664	five period of Gastrodia elata	37.820
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	27.380
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	33.130
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	27.740
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	28.580
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	26.750
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	29.440
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	27.150
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	26.490
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	27.050
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	26.610
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	28.080
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	28.080
SRP279888	Gastro	Gastrodia elata tuber	33.31
	Juven	Juvenile tuber	37.10
	Mother_Gastro	Mother tuber of Gastrodia elata	30.79
	Mother_Juven	Mother tuber of Juvenile	29.46