Detail information of GWHGAAEX001635/evm.TU.scaffold_110.89
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|159897848|ref|YP_001544095.1| | 1.00E-59 | amine oxidase [Herpetosiphon aurantiacus DSM 785] |
| KOG | KOG0029 | 0 | Amine oxidase |
| nr | gi|743785746|ref|XP_010921991.1| | 0 | PREDICTED: lysine-specific histone demethylase 1 homolog 2 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9LID0|LDL2_ARATH | 0 | Lysine-specific histone demethylase 1 homolog 2 |
| trEMBL | tr|M0T1V1|M0T1V1_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P26260_001} |
| TAIR | AT3G13682 | 0 | LSD1-like2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000110 | 3258205 | 3303420 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001635
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04433.16 | SWIRM | 156 | 224 | 1.20E-10 |
| PF01593.23 | Amino_oxidase | 250 | 675 | 1.10E-94 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SWI/SNF-SWI3 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K11450 | KDM1A, AOF2, LSD1 | Thermogenesis | map04714 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 28.960 |
| SRR2545915 | Juvenile tuber | 14.830 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.260 |
| SRR5643514 | five period of Gastrodia elata | 6.480 | |
| SRR5643515 | five period of Gastrodia elata | 6.070 | |
| SRR5643524 | five period of Gastrodia elata | 5.560 | |
| SRR5643525 | five period of Gastrodia elata | 17.610 | |
| SRR5643528 | five period of Gastrodia elata | 14.950 | |
| SRR5643658 | five period of Gastrodia elata | 17.770 | |
| SRR5643659 | five period of Gastrodia elata | 8.760 | |
| SRR5643660 | five period of Gastrodia elata | 10.100 | |
| SRR5643661 | five period of Gastrodia elata | 7.780 | |
| SRR5643662 | five period of Gastrodia elata | 8.860 | |
| SRR5643663 | five period of Gastrodia elata | 9.510 | |
| SRR5643664 | five period of Gastrodia elata | 8.790 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.640 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 15.250 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.800 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 19.520 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 14.210 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 17.180 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.730 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.540 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.040 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.560 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.340 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.340 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.48 |
| Juven | Juvenile tuber | 18.37 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.70 | |
| Mother_Juven | Mother tuber of Juvenile | 11.67 |