Detail information of GWHGAAEX001636/evm.TU.scaffold_110.90
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|743800783|ref|XP_010926119.1| | 0 | PREDICTED: glucan endo-1,3-beta-glucosidase 3-like [Elaeis guineensis] |
| Swissprot | tr|Q9ZU91|E133_ARATH | 0 | Glucan endo-1,3-beta-glucosidase 3 (Precursor) |
| trEMBL | tr|M0RQT1|M0RQT1_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P09510_001} |
| TAIR | AT2G01630 | 0 | O-Glycosyl hydrolases family 17 protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000110 | 3339851 | 3358322 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001636
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00332.17 | Glyco_hydro_17 | 23 | 342 | 1.40E-83 |
| PF07983.12 | X8 | 360 | 430 | 1.20E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH17 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K19891 | GN1_2_3 | Metabolic pathways | map01100 |
| Starch and sucrose metabolism | map00500 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.260 |
| SRR2545915 | Juvenile tuber | 13.800 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.670 |
| SRR5643514 | five period of Gastrodia elata | 23.790 | |
| SRR5643515 | five period of Gastrodia elata | 15.450 | |
| SRR5643524 | five period of Gastrodia elata | 19.140 | |
| SRR5643525 | five period of Gastrodia elata | 22.110 | |
| SRR5643528 | five period of Gastrodia elata | 25.750 | |
| SRR5643658 | five period of Gastrodia elata | 17.960 | |
| SRR5643659 | five period of Gastrodia elata | 21.740 | |
| SRR5643660 | five period of Gastrodia elata | 22.190 | |
| SRR5643661 | five period of Gastrodia elata | 23.650 | |
| SRR5643662 | five period of Gastrodia elata | 18.890 | |
| SRR5643663 | five period of Gastrodia elata | 17.320 | |
| SRR5643664 | five period of Gastrodia elata | 17.910 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 20.950 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 27.430 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 21.660 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.980 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 13.900 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.220 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 19.540 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.200 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 39.260 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 25.630 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 24.010 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 24.010 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 13.62 |
| Juven | Juvenile tuber | 13.02 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.46 | |
| Mother_Juven | Mother tuber of Juvenile | 5.70 |