Detail information of GWHGAAEX001639/evm.TU.scaffold_111.2
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0082 | 0 | G-protein alpha subunit (small G protein superfamily) |
| nr | gi|672179966|ref|XP_008810161.1| | 0 | PREDICTED: extra-large guanine nucleotide-binding protein 3-like isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|Q9C516|XLG3_ARATH | 0 | Extra-large guanine nucleotide-binding protein 3 |
| trEMBL | tr|K3YPV5|K3YPV5_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si016297m} |
| TAIR | AT1G31930 | 0 | extra-large GTP-binding protein 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000111 | 27292 | 64498 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001639
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00503.19 | G-alpha | 449 | 835 | 5.00E-58 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0007165 | Biological Process | signal transduction |
| GO:0007186 | Biological Process | G-protein coupled receptor signaling pathway |
| GO:0003924 | Molecular Function | GTPase activity |
| GO:0031683 | Molecular Function | G-protein beta/gamma-subunit complex binding |
| GO:0019001 | Molecular Function | guanyl nucleotide binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 39.950 |
| SRR2545915 | Juvenile tuber | 33.380 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 37.410 |
| SRR5643514 | five period of Gastrodia elata | 35.810 | |
| SRR5643515 | five period of Gastrodia elata | 39.170 | |
| SRR5643524 | five period of Gastrodia elata | 36.050 | |
| SRR5643525 | five period of Gastrodia elata | 30.770 | |
| SRR5643528 | five period of Gastrodia elata | 30.540 | |
| SRR5643658 | five period of Gastrodia elata | 34.780 | |
| SRR5643659 | five period of Gastrodia elata | 31.370 | |
| SRR5643660 | five period of Gastrodia elata | 32.330 | |
| SRR5643661 | five period of Gastrodia elata | 30.490 | |
| SRR5643662 | five period of Gastrodia elata | 29.880 | |
| SRR5643663 | five period of Gastrodia elata | 29.950 | |
| SRR5643664 | five period of Gastrodia elata | 30.800 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 35.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 36.360 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 33.260 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 35.120 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 32.210 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 39.270 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 32.470 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 32.400 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 31.450 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 31.820 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 36.270 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 36.270 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 22.53 |
| Juven | Juvenile tuber | 39.80 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 41.50 | |
| Mother_Juven | Mother tuber of Juvenile | 56.71 |