Gene detail

Detail information of GWHGAAEX001641/evm.TU.scaffold_111.4

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|284166310\|ref\|YP_003404589.1\|	6.00E-73	pectinesterase [Haloterrigena turkmenica DSM 5511]
nr	gi\|672170375\|ref\|XP_008805247.1\|	0	PREDICTED: pectinesterase 31-like isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9LVQ0\|PME31_ARATH	0	Pectinesterase 31
trEMBL	tr\|M0RRU4\|M0RRU4_MUSAM	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}
TAIR	AT3G29090	1.00E-179	pectin methylesterase 31

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000111	316893	329627	+

Transcript Sequence
>GWHTAAEX001641 GTTAGAAGAAATCACCTGCAAATAAATGGGATCTTAAAAAAAGCAACATAATCCAACCTTTTTCAAAACCAGGTCGGAAGAAATGACAGAAAATCAGAAAAACAGACTCAATAGGATCCAGCAAAAAAAAGGCTTTAATTTTCTTAAAAGCAAACTTTATTTTTCTTGTTGATTTTTGAGGGAATTAGAGTTCAGGGAGAAACCGTGACGCTTCCGAAGCTGAACTCTTCAACTAGTCTTCATCTCATTTGGCGTCGGCTCCTAATTTGCAGGTTTAGTACTGTGCTTCTGCGTCTCCTTCACCAGATTGTTTTTTTCCTTCAACAACTCTACAAAATCCTCTCCGGTATGTACGTAAATATCCCTTTTTTCTGCAATCCTTCTTAGTATCCTCCGGCTTGGTTCCAAGTTATTCCCTACAGAGAGCTCTGAGGTCTTTTTCTCCGGAAACATCTCTTTTTCTCCGCTATCGCAGCTTGCCGCTGGCGTAGGTTTGCTGCTCGGACGATTCTTTTATTATTTTCTTACAGCTGACCCACCTTCTCTCTTGCAACAGATCTTCCGCCTCCTTTTTCCGCTTTTATTCTCATAATTTGTGCTGTTAGTTCCAGATTTTCCTCTATTTTTTCAATCTACACTTTGTCCACAATAAAATTTTCTATTTTAATTTTTAGAAATTATGTGCCTTTGTTTATGTATCTCTTCCTTTTATTAAATTGTCTGTTGGCTATCATGCGTTTGTTGCTCATGCATTTGTTTCTCATGCTTTCTCAGGAGAATGAGTTTTGATAAATTTTTTGATATTAGCAAGCAATACTTAAATGATCAAAGGATACACATTAAGGTGTTCAATTTTTACAACTAAAATTTTTTTATACGATTTCAGCTTAAAAATGAGTTCCAATAACATATATAGAACTCCACCTAAATGTTCTCTCCCTTGACATTTTATTTAGTTTTTTTACAACATTTCAGTTTAAAATTTAGGAGTCCTGATATTAGGCAAGGTAGAAATTTTGTGTGATTTCACCAATAAGTATTAATAGTGCACTGCACTTGATGTGCCACAGTTGTTTGTTTTTCTATTATTTCAGTGTAACCTATTTTTTCTTATACTCTTGGGGAGAGTTTTAAGCATGACATCTTAAAAGGTTTAATTTCTTGTACTTTTTGTTGTCAAGTTTGATAATGGGCGTTTGGGAGAAATATCTTTCTGCTATTATTATTTAGCACATAATGGTTTAATTTAAATTATTTACATACACACGACTTATATCTGTATATAAGGGAATTCATTCATCAACATTGAAGCAAAACTTTTGTTAAGGGTATTTGTTAATCTTAGATATAATTATATGCAGTTTTTTGCATTTAAGTAATTCTTCTTCTTGATGTAGAATTGAATTTCATTTTTTCTCTTTGATTAGGAAAAATACTAGTCGGGAGCTTCTCATTGACTTATTTTGTACTTTTTATTTTTCTTTTAACAAGAATAATTTTTTTATTTTATGTGATGATCTATCTACATTTTACACCCTTCTTGGTTTTTCCAAACTCTTGTGTAGCTTTCACAATATATAAAAAATGTGAGCATTGGTGTTTAAAACATTTAAGTAGTTAAAATATAAACTAGCATGTTAAAAGAACATATAAATAGTGATAATGTACATCTTATGCAAAATAAAGTTTTGATTAGCTTTTATCAAGGTTGGACTGACTCATTTTTTATTTCAGGCTTAAAGTGCTACCCTTAAAGTCTTATAAAGAAACTTTAAGATTAAAATATTTTATGAGGTAGATTATTGGCCTGTAAAGTTGAAACAAATTGATAAATAAGTGTTGCAAAGATGAGTAAGCTATGGTGGATGCGTGATATACACATATGGTTGAGATGAGGAATGAGTACATTAATAATAAGGTTTGATGAACTATAATTGAGTATTAGCTCATAGAAAATTATTTCAAATGGTTTGAGCATATTAAACTTAGTCATAGACTATAATATCCTGCTATAAGGAAGGTTGAGTTAATGAATATTGTCAAACCTTAAAGAGGAAAATGAAAACCCCACTTAGTGGAACTTTGGGTGGGGCTATCATCTGTTATAGCACAATTGAGGCTAAGTATTCTTTTAGCCAGCCCTACTTAGTGGGATTAAGGTTTGGTTTGTTGTTGTTGGTTTGTCAATGTGGTCAAGAACTTATTCATACAGGTTAATTAATTTCAAAAAATGTATATTATACAATAACAGAAATCTTTTGTGTGGTGCTTAGGGGAGAGGGGGATAGAGATAATGTGAGGGGTGGATAGAGAGAGGGAGGGAAGGAAGTATAGTGATGAGAGTAAGAGATTGGGGAGATAGGTCAGTGTTAGGGGGGTGAGATAGTGTGTGTGTGTGTGTGTGATGTGCTCAAGTATTAGATGAAACACTCAAGAATTACATCAGTTTTTAAATTTATTGTATTTTAACGACACTCAATATTTATTATTTTTGAGTAATTTTAATGTATGTACTACATATACAAATTTGCACTTTAAACCCATTGCATTTTACTTTTTTAAGGATTTACTTGTCATATGTTAAGAGTTACCGTTACCTGTTTGTCCATTTGAAAGAAGTGAAATTGGTTCCTAGAGCTTGAGAATGAAGAAAATGGTATACTAGGCATAAATATCTATCACGACCTTTATATATTGGGTTCCTTTGGCAAAATAACGCAATTATTTTGATAGTGAGAGGTAAAGCAAGGGAAGAAGAGGATGTCATCGATTCGTGTTCGAGTGATGAAAGTGTCCATGGATGGAAGTGGAGACTATAACAAGTTGCAGGATGCCATTGATTCAGTGCCACTCTCCAATAGCACGAGAACTCTAATTCAGGTGTCCCCTGGGTTTTACAAGGGGCCTTTATATGTTCCTAAGACAAAGAACTTTATAACCCTTGCTGCATATAGCCCTGAGACCACCATTATCTCTTGGCACAACACTGCTACGTGCATAAACCATCACCAGGAAGCCCATGTGATCGGCACAGGAACCTTTGCTTGTGGAAGTGTGATTATTGAAGGAGAGGATTTCATTGCTGAGAATATTACATTTGAGAACTCGGCCCCTCAGGGTTCTGGCCAAGCCGTCGCTGTTAGAGTTACAGCCGATCGCTGTGCATTCTATAATTGCAGGTTTCTTGGATGGCAGGATACCTTGTATTTGCATTTTGGCAAACATTATTTGCGAGATTGCTATATTGAAGGAAGTGTAGATTTCATCTTTGGAAATGCTACCGCACTTATTGAACATTGTCACATCAATTGTAAATCTACAGGATTTATAACTGCTCAAAGTAGGAAATCCTCTCAAGAACCAACTGGTTATGTGTTTTTGAGGTGTGTTATAACTGGCAATGGAGGTGCTTCATTTTCATATCTTGGGCGGCCGTGGGGCCCATTTGGAAGGGTTGTTTATGCATACACTTGGATGGATTCCTGCATAAAACCTGCTGGGTGGCACAACTGGGATAAGCCCCAGAATGAGAGGAGCGCCTGCTTTTATGAATACAGATGCTCTGGACCTGGAAGCCATCTCTCAAACAGAGTAAGTTGGTCTAGAGAGCTACTGGATGAGGAGGCAGAACAATTTCTAAGGCACTCTTTTATTGATCCAGATCCTCAAAGGCCTTGGTTAGCTCAACGAATGGCTGTAAGAGTACCATTTTCTGCTTAAATGCCTTAAGTAAATATCTACTAATCCATAGACAGGACTTTGTGTTTTGAGTAATATATTATATTGGCCAACTCATTGTAAATTTTAATTAGTGAAATTAACAATTATTTGTGAATGCATTTTAGAATATATATTAATTTAGTTTTATTGCTATATGAAAATAATGCACATCTTTTTGAGATTTTATGTAACATAAATCTGGCCTCAATGAGGTGATGCGCAAGAGGGTAGAGTCACCTCAAATGCTGGCATGTAATTATACGTAAATATATGCATGATTTGATTCAACAAGTGCTGAAGCACTTAAGTTCAATACTACTCTAAATGCGTCTTAATTATAATTATAACTAGTGTACTTATATTCATAATGTTTTATACATGCTATAAGATAAAAATAGGCGTGCATGATATGAATTGATAAATGAATATTTGTGTATGATCAGTTAGTGCCTAGCACTCCGAGATTATTGTTACCCACACATCTTATGATCATTAAAGTTTTTTACCTGAAAGTACATAAAGATATATGAAGATAAATTCAGGAGTACATGTTCTTATTTTTGTTTATACATTGCAATTTGATTAGAGCTTAATCGTCTAAAATGCTCCTCCTTTGTAAGCTTTTGTATGTTATGCATCTTGGAGCATAAAATTAGAATGTGTAATGATAATAATATAATAGGTGGATAGTGATATGTGAGGCATTAGAATTTCTTAAGAATAGATCTGTGTTGTGTGGAAAGAATATTTTAACTCTTATATTTTCTGTGATTAATTAACTCCTTTGATAGTAATCTTCAGGACATTACAGTTGGTGTCAAGTGTTCTTAAAAGTTGAGGCTTGGACAAAAACAAAGTCATAGGACATGGAAACCTTGAGATTTTGCTGGTCTTCATGATCGGGAATGTCTCACTTTTGAACAGTCTACTATGGCAACTCCTTTTCCTCCTTGCGGTGTGTGCTGGTGGCTTTAGGGTTTATTTGAAAATCATAGTAGAATGTTTATTTGCTTGTATGCAGGCTACCTTTTAACTGATTGGCTACTGTACCTAATGAGCTTTGCTCCTTTAGCTCATGTTTTTTATGTTTCACCTATGCAACTAGATGTGTTTAGCCTCTCACTAAATGGTAGGACTCTTCAGATCTCTTTCTTGCAGCACATTCTTTAATTCAGGAGTTTAACATTCATTCTTCATTGAGGATTGAGCCAATCAGTTAAAAGGTAGCACTGTTTCTTTTAGTGCTTTACTTCTATGTAAATTTTCCATCTGTGTAAAGAGTGAGTGCTAGTTTGATGCATTATAGGGAGATTGAAATCTCCCATTGCAAGTTGAATGTTGAATTAATCAAAGTTGTAATAGTTTTTTGTTTAAAGGAGTTGGTTACCCAC

Network for GWHGAAEX001641

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01095.18	Pectinesterase	10	299	2.70E-71

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CE8

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	Biological Process	cell wall modification
GO:0030599	Molecular Function	pectinesterase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.190
SRP064423	SRR2545915	Juvenile tuber	22.060
SRP108465	SRR5643513	five period of Gastrodia elata	17.930
	SRR5643514	five period of Gastrodia elata	21.940
	SRR5643515	five period of Gastrodia elata	18.820
	SRR5643524	five period of Gastrodia elata	23.270
	SRR5643525	five period of Gastrodia elata	21.030
	SRR5643528	five period of Gastrodia elata	16.880
	SRR5643658	five period of Gastrodia elata	25.190
	SRR5643659	five period of Gastrodia elata	16.090
	SRR5643660	five period of Gastrodia elata	17.280
	SRR5643661	five period of Gastrodia elata	12.950
	SRR5643662	five period of Gastrodia elata	13.040
	SRR5643663	five period of Gastrodia elata	19.310
	SRR5643664	five period of Gastrodia elata	13.550
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	28.570
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	21.270
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	25.460
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	30.450
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	37.850
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	42.620
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	31.560
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	35.300
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	23.290
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	27.320
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	19.480
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	19.480
SRP279888	Gastro	Gastrodia elata tuber	26.90
	Juven	Juvenile tuber	29.92
	Mother_Gastro	Mother tuber of Gastrodia elata	27.60
	Mother_Juven	Mother tuber of Juvenile	32.92