Detail information of GWHGAAEX001644/evm.TU.scaffold_111.7


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743779102|ref|XP_010920014.1|1.95E-169PREDICTED: transcription factor HBP-1a-like isoform X1 [Elaeis guineensis]
Swissprottr|P23922|HBP1A_WHEAT6.00E-67Transcription factor HBP-1a
trEMBLtr|B9RZ25|B9RZ25_RICCO4.00E-153DNA-binding protein EMBP-1, putative {ECO:0000313|EMBL:EEF43527.1}
TAIRAT2G355304.00E-126basic region/leucine zipper transcription factor 16

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000111397441408774-
Transcript Sequence

Network for GWHGAAEX001644

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07777.10MFMR1962.10E-30
PF16596.4MFMR_assoc1352696.80E-43
PF00170.20bZIP_12973594.10E-20
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilybZIP

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms85.040
SRR2545915Juvenile tuber61.740
SRP108465SRR5643513five period of Gastrodia elata47.910
SRR5643514five period of Gastrodia elata40.570
SRR5643515five period of Gastrodia elata46.170
SRR5643524five period of Gastrodia elata39.990
SRR5643525five period of Gastrodia elata73.890
SRR5643528five period of Gastrodia elata71.550
SRR5643658five period of Gastrodia elata93.890
SRR5643659five period of Gastrodia elata47.120
SRR5643660five period of Gastrodia elata44.430
SRR5643661five period of Gastrodia elata42.830
SRR5643662five period of Gastrodia elata44.980
SRR5643663five period of Gastrodia elata44.780
SRR5643664five period of Gastrodia elata49.700
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_141.970
SRR6049655Rhizomagastrodiae_C368-T10_good_123.630
SRR6049656Rhizomagastrodiae_C368-T07_good_142.360
SRR6049657Rhizomagastrodiae_C368-T07_good_139.530
SRR6049658Rhizomagastrodiae_C368-T04_good_138.440
SRR6049659Rhizomagastrodiae_C368-T04_good_139.150
SRR6049660Rhizomagastrodiae_C368-T01_good_141.230
SRR6049661Rhizomagastrodiae_C368-T04_good_133.390
SRR6049662Rhizomagastrodiae_C368-T01_good_131.710
SRR6049663Rhizomagastrodiae_C368-T01_good_136.930
SRR6049664Rhizomagastrodiae_C368-T10_good_139.660
SRR6049665Rhizomagastrodiae_C368-T10_good_139.660
SRP279888GastroGastrodia elata tuber 43.79
JuvenJuvenile tuber40.92
Mother_GastroMother tuber of Gastrodia elata 61.28
Mother_JuvenMother tuber of Juvenile 48.19