Detail information of GWHGAAEX001648/evm.TU.scaffold_111.12
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 3.00E-108 | FOG: PPR repeat |
| nr | gi|695077763|ref|XP_009386240.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g51320 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q0WVU0|PP278_ARATH | 4.00E-119 | Pentatricopeptide repeat-containing protein At3g51320 |
| trEMBL | tr|M0U797|M0U797_MUSAM | 1.00E-160 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP07860_001} |
| TAIR | AT3G51320 | 3.00E-108 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000111 | 566268 | 568942 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001648
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 181 | 227 | 4.30E-08 |
| PF01535.19 | PPR | 253 | 282 | 1.40E-05 |
| PF01535.19 | PPR | 284 | 311 | 0.0018 |
| PF01535.19 | PPR | 325 | 350 | 0.0095 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.520 |
| SRR2545915 | Juvenile tuber | 0.960 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.180 |
| SRR5643514 | five period of Gastrodia elata | 2.240 | |
| SRR5643515 | five period of Gastrodia elata | 1.870 | |
| SRR5643524 | five period of Gastrodia elata | 1.410 | |
| SRR5643525 | five period of Gastrodia elata | 2.150 | |
| SRR5643528 | five period of Gastrodia elata | 2.100 | |
| SRR5643658 | five period of Gastrodia elata | 1.080 | |
| SRR5643659 | five period of Gastrodia elata | 5.150 | |
| SRR5643660 | five period of Gastrodia elata | 6.150 | |
| SRR5643661 | five period of Gastrodia elata | 5.980 | |
| SRR5643662 | five period of Gastrodia elata | 6.770 | |
| SRR5643663 | five period of Gastrodia elata | 5.660 | |
| SRR5643664 | five period of Gastrodia elata | 5.360 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.390 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.070 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.570 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.180 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.110 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.470 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.030 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.410 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.900 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.380 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.260 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.260 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.53 |
| Juven | Juvenile tuber | 2.31 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.96 | |
| Mother_Juven | Mother tuber of Juvenile | 0.99 |