Gene detail

Detail information of GWHGAAEX001662/evm.TU.scaffold_111.37

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695001249\|ref\|XP_009415336.1\|	0	PREDICTED: MND1-interacting protein 1 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q8RX22\|MIP1_ARATH	8.00E-131	MND1-interacting protein 1
trEMBL	tr\|M0S2K9\|M0S2K9_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P24020_001}
TAIR	AT2G35330	7.00E-154	RING/U-box superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000111	1408300	1412916	-

Transcript Sequence
>GWHTAAEX001662 GTAATAGGTTCCCGTTGCTCTTTCAACTTTCACCTATCTCGCCTAGGGTTTTACGCCATTGCTGCCGGCTCCCCGAGCTCTTCTGCTCATAATCGCCATTGATCTTGTCCGATGGGCCTCAACGCTCGTGAGAAGACGCTCCGTCCAGGCGCCGTCGGCCGGAAGCGGCATGTTCCCCGCCCTTCGATTTCCCAAATGGCCTTTCCTTCGGAGCCCTCCCTCGTATCAGCTTCACCCTACCCTAACGCCAAGCTCAATCTCGGCTCCAACGCTAGCCTTAACCCTAGCCCTGCCGGATTCGATTGGGGGTACTGCACCGAGGAGCAGCTCGAGGAGATCGTCATCAACAACCTGGACTGCGTCTACAAGGAAGCAATCTCCCGTTTGGTCTCTCTCGGCTACGACGAAGCCCTAGCGCTTCGATCCGTCCTCTGCAACGGCCATTGCTACGGCGCTATGGACGCCGTTTCCAATATCATGCAGAACGCTCTTGCGTACCTCAATACCGAAGCGGCCGCCGCCGCTGCCGGCGATGGGGACCCCCCAGCCGGCGCCTTCTCCGATCTTCGCCATCTTGAGGAGTATTCTCTTGCTGGCATGGTTTGCCTACTTCAGCAGATCCGCCCAGATCTGTCCCGAGGGGAGGCCATGTGGTGCCTCCTCATGAGCGGTCTTCATGTTAACCGCGCCAGTTCTATTGAGCTTCCTTCCCTCTCGGTTCCAGGTAATCTCCAAGCTTCCGCCTTCACGTCTGGAGCTGCTTTTCCATTTGCAGCCGGAGGCGGAGATGCTGTTACAGATACAACTGGCACCGAACCCGATTCTGCCATCGGCCCTGGATCTCATTCTTCTGAAAGTATCAAACATTCTTTTTTGAGTCAACCCGTCAATGAGTATTGCCCTGAGCTGAAGATGCATGGCAAGCAAAGGCAGCAGATGGTGGAAGATGAGGCTGGTGATCTTGTACAATTGGTGCTCAAAAGGCTGGAATCCATGAGAATTGAGGATGATAAGTATCAGGATAAGGAGCTTCAGGACCAGAAAAAGGAGATGATTATGGAGCTTATTCAACAGATCCGTGAGCTGGAGGGTCAGATCAAAGAGAGGAAGGATTGGGCTCAGCAGAAGGCCATACAGGCTGCGCAGAAGCTGAGCAGTGATCTCCATGAGCTCAGGGTGCTTAAACTGGAACGTGAGGAGAACCAGAGGGCTATGACAGGGAAACAGATGCTGGAAGACTCAACCATGAAGAGACTTGCCGATATGGAAAATGCCTTAAAGAAGGCTAGTGGGCAGGTAGACCGCGCCAATGCAGTCGTAAAAAAGCTTGAGACAGAAAATGCAGAGATAAGGGCTGAAATGGTTGCATCAAAGCTTAGTGCGTCTGAATCAGTTACTGCATGTTTGGAGGTTACCAAGAGGGAGAGAAAGTGCCTGAAGAAGCTAGTGGCATGGGAAAAGCAAAAGGAAAAGATGCAAGAGGAGATTTCTGAAAAGAGGAAGAAGATTGTGCTGATGCAACAACAGTTGGCTGAAGTTCAGGTGGATACAAAACAACTTGAGAGGAAGTGGAGGGAGGCTGGGAAGGAGCGGGAGGAGGCGCAGGCAGGCGTGGAGGAGGAGCGCCGGGCGAGGGACGCAGCGGAGGAGAGCTGCAGGAGGAGGCAGGAAGGCTTGCGCCTCAGGATGGAGGAGGACTCCCGCCGCTACAGGGACGATATTCGTAGACTTGAAGAGGAGCTCTCCCGCCTCAGGGGCGCTGCCGCCCCTGCTAAGCTGCCCCCATCTTTAGCTGCGGCCGCCGCCCATTCTCCCTTGGCCGCTCGGAAGGGTGGCGGGCGCGGCCGGGCGTGCTGGGTCTGCAAGCACCGAGACGCCTCTGTCGTCCTCTTGCCCTGTGCCCACCAGGTCCTCTGCCTCCGCTGCAGCGAAAGCCACAGGGATAAGCCCTCCTGCCCCGCGTGCAGGATGCCCGTTGACGACCGGATTCATGTTTACGGCGCTGCCACATCATAAAATTATATACACGGTAAGGCTTCCTTTTTGGTATGTTGACCCAAGTTTTCCTCAAAAATTTTATAGGTGAAAATTTAGTCATATATAAGAGGGGGTGATAGGCTTCATATACTTGTGCATGAAGTTTTTCTCATATATATATATATATTTATATA

Network for GWHGAAEX001662

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13920.5	zf-C3HC4_3	579	624	1.20E-11

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	13.520
SRP064423	SRR2545915	Juvenile tuber	14.890
SRP108465	SRR5643513	five period of Gastrodia elata	13.690
	SRR5643514	five period of Gastrodia elata	11.580
	SRR5643515	five period of Gastrodia elata	14.140
	SRR5643524	five period of Gastrodia elata	12.630
	SRR5643525	five period of Gastrodia elata	12.340
	SRR5643528	five period of Gastrodia elata	13.440
	SRR5643658	five period of Gastrodia elata	10.720
	SRR5643659	five period of Gastrodia elata	22.490
	SRR5643660	five period of Gastrodia elata	30.300
	SRR5643661	five period of Gastrodia elata	24.980
	SRR5643662	five period of Gastrodia elata	25.790
	SRR5643663	five period of Gastrodia elata	23.570
	SRR5643664	five period of Gastrodia elata	24.830
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	20.330
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	18.610
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	20.540
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	19.030
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	20.520
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	19.830
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	18.550
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.740
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	21.190
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	21.740
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	21.350
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	21.350
SRP279888	Gastro	Gastrodia elata tuber	29.68
	Juven	Juvenile tuber	26.14
	Mother_Gastro	Mother tuber of Gastrodia elata	23.58
	Mother_Juven	Mother tuber of Juvenile	30.77