Gene detail

Detail information of GWHGAAEX001666/evm.TU.scaffold_111.46

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|298206918\|ref\|YP_003715097.1\|	7.00E-09	phosphoenolpyruvate carboxykinase [Croceibacter atlanticus HTCC2559]
nr	gi\|743826956\|ref\|XP_010933455.1\|	0	PREDICTED: uncharacterized protein LOC105053842 [Elaeis guineensis]
trEMBL	tr\|M0SVD0\|M0SVD0_MUSAM	5.00E-170	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P03510_001}

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000111	1706613	1748435	+

Transcript Sequence
>GWHTAAEX001666 ATAGAACTAATATGCAAATATTAATGGTCGGATTTTAAGATAAAATTATGCCTAAATGCAAAATCATCGGGGCTGAGAACTCCACAATATAAAGATGATCAGATCAAAAAAGTTAATAATGCTCGCAGAGCCTCAATTTCTTCAGGAGTCGATCCGTCCATAGAACTCTCTGCGACGCCCTCTTCCTCGGTGCTGCGAAGCCTTCTCTACTCATCAGATCGGAGCTGTGGAAATGGCGACGCTTTTTCTCAGAACACTATCCCGTTCTTCCGTTACCTCTTCGAGATCGAGGCTTCCCTTTAATTCTTTCCTCCATTTAACAAGAGCGTTTGCAGTTCCTGCAGCAGTTGCTGATGAGGAAGCAGAAACGGTGTTGTTTCCCAGGGATGGTTCTGGAGTTTCCTACGGGTTAAACTGGGCTTTAGCAGGTAGAGGTGTTATTGTGAAGGATAAAGCTTTTTATAATTTGAAGAGGCCTGAACTCGAAAACTTTGGTGCAAGAAAAACAGAAGCTTTGTCGGGTCTTCCGCTGTATATGAGAGGCAACACAGCTGGAGGGACTTCTGATATTTCAAAGGCTCAATTTAGTAAACTTTTGAAACAGGTTGCATCTCATATTTCTTCTGTCTCAAATGTGTTTGTTCAAGACGGAGCCATATCTTCATCTCCAAAATGTGATGCAAAGGTTCGCATAATAAGTGATAGCTCGTCTGCTTTATTGCTACTAGCTGATATTCTTTGGAAAACACCTACCCGGGCAGTTTCACATGACTCTTGTCCACTCACGGTTTATGTTGCTAGCTCCCTAAGCTCAAAAATTTGGGAGAATATTGGCCTCAGCTTGAAACCCACTGCTGCTTTTGCAGCTGCTGACATTGAGCGTTCATCTCTCATTTTGTGCGGTAATGCTTTTGCTTATAATAGTATAGTGAAGGATGCTTTATCAGCTCTTGCTGCTCCCATAATCTCTGCTAAGAAGGGCCTTTCTCTTTCTGCAAGGGTTCTTGTGTCTGGTAATTCCGTAATTCTATTGTTTGCATCTGAAGATACCATCAAGAGTAGCTCTGATCTTAATGGTTCACTTCTTTCTATGGATGCTGGTGTGGTTATCTCTTCTCAGGGTGTTGCACCATTCTTCCAAACAAAAGACCCGACTTTGCCTAATGTGCTAAAGATGCCTGCGGCTATTATTTTTGCATCTGCGGACAGCACCAGTGCCCTACCCTCTATATCAAGGCTCTCACCAGGACAGGCTGCCTACCATTTTCTTGCTGGCTATCAGGATGGCAAGTTCACACCGGCATATACTAATGGTTCATCCCCTATTGAGCTCTTGGCTCTTGCTAATGCTCTGTTCTCTCTACTGAAGGATAGCGAGATCCCTGCCTTCTTGATTAATGTCTATGACAGTGGAAAACACATTATTGGAATGGAGCTTTTAAAGTCGGTGGAATCATCTCTGTCATCTGATTTGCCAAAGGCCCAGCTTGGGACTAATAATGATGCTCATGTGGTTGATCTTAAAGGAAAGTTCAAGTGCTTCCTTTCTGGTAGGTTTGAAGGATTACCTGAAGAATTTTCATTCTGAGCCTCTCTCTCTCTCTCTCCTCTTATCTATCATATTTTCTTAATAAAATAATTAAAGTTATATCAAATTTTTAATTTATTTGTTCAAATATCATGCATATATATATATATATAT

Network for GWHGAAEX001666

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01293.19	PEPCK_ATP	308	349	3.70E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006094	Biological Process	gluconeogenesis
GO:0005524	Molecular Function	ATP binding
GO:0004611	Molecular Function	phosphoenolpyruvate carboxykinase activity
GO:0017076	Molecular Function	purine nucleotide binding
GO:0004612	Molecular Function	phosphoenolpyruvate carboxykinase (ATP) activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	75.110
SRP064423	SRR2545915	Juvenile tuber	62.740
SRP108465	SRR5643513	five period of Gastrodia elata	70.270
	SRR5643514	five period of Gastrodia elata	85.960
	SRR5643515	five period of Gastrodia elata	66.000
	SRR5643524	five period of Gastrodia elata	90.160
	SRR5643525	five period of Gastrodia elata	73.040
	SRR5643528	five period of Gastrodia elata	74.290
	SRR5643658	five period of Gastrodia elata	75.620
	SRR5643659	five period of Gastrodia elata	43.560
	SRR5643660	five period of Gastrodia elata	41.640
	SRR5643661	five period of Gastrodia elata	42.200
	SRR5643662	five period of Gastrodia elata	43.430
	SRR5643663	five period of Gastrodia elata	39.710
	SRR5643664	five period of Gastrodia elata	43.040
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	72.480
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	80.170
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	77.570
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	65.050
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	67.990
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	71.790
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	67.610
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	65.660
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	89.170
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	78.160
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	92.180
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	92.180
SRP279888	Gastro	Gastrodia elata tuber	61.59
	Juven	Juvenile tuber	72.96
	Mother_Gastro	Mother tuber of Gastrodia elata	56.07
	Mother_Juven	Mother tuber of Juvenile	65.81