Detail information of GWHGAAEX001669/evm.TU.scaffold_111.49


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08007.00E-44FOG: Predicted E3 ubiquitin ligase
nrgi|747091411|ref|XP_011093432.1|7.04E-53PREDICTED: RING-H2 finger protein ATL52-like isoform X2 [Sesamum indicum]
Swissprottr|Q7XLY8|ATL41_ORYSJ2.00E-45E3 ubiquitin-protein ligase Os04g0590900
trEMBLtr|M4CQC6|M4CQC6_BRARP8.00E-52Uncharacterized protein {ECO:0000313|EnsemblPlants:Bra006415.1-P}
TAIRAT3G035507.00E-44RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011118758721877004+
Transcript Sequence

Network for GWHGAAEX001669

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_21281716.80E-14
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms7.100
SRR2545915Juvenile tuber12.860
SRP108465SRR5643513five period of Gastrodia elata26.840
SRR5643514five period of Gastrodia elata36.950
SRR5643515five period of Gastrodia elata27.590
SRR5643524five period of Gastrodia elata33.700
SRR5643525five period of Gastrodia elata36.590
SRR5643528five period of Gastrodia elata29.760
SRR5643658five period of Gastrodia elata44.710
SRR5643659five period of Gastrodia elata19.770
SRR5643660five period of Gastrodia elata17.730
SRR5643661five period of Gastrodia elata21.520
SRR5643662five period of Gastrodia elata18.520
SRR5643663five period of Gastrodia elata15.870
SRR5643664five period of Gastrodia elata12.780
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_122.190
SRR6049655Rhizomagastrodiae_C368-T10_good_157.710
SRR6049656Rhizomagastrodiae_C368-T07_good_129.980
SRR6049657Rhizomagastrodiae_C368-T07_good_121.790
SRR6049658Rhizomagastrodiae_C368-T04_good_117.310
SRR6049659Rhizomagastrodiae_C368-T04_good_118.170
SRR6049660Rhizomagastrodiae_C368-T01_good_120.700
SRR6049661Rhizomagastrodiae_C368-T04_good_118.770
SRR6049662Rhizomagastrodiae_C368-T01_good_134.050
SRR6049663Rhizomagastrodiae_C368-T01_good_126.540
SRR6049664Rhizomagastrodiae_C368-T10_good_141.000
SRR6049665Rhizomagastrodiae_C368-T10_good_141.000
SRP279888GastroGastrodia elata tuber 16.78
JuvenJuvenile tuber33.59
Mother_GastroMother tuber of Gastrodia elata 34.56
Mother_JuvenMother tuber of Juvenile 30.18