Detail information of GWHGAAEX001670/evm.TU.scaffold_111.50
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0627 | 5.00E-135 | Heat shock transcription factor |
| nr | gi|743885480|ref|XP_010909933.1| | 1.88E-165 | PREDICTED: heat stress transcription factor A-1-like [Elaeis guineensis] |
| Swissprot | tr|Q84T61|HSFA1_ORYSJ | 3.00E-158 | Heat stress transcription factor A-1 |
| trEMBL | tr|B7EQF4|B7EQF4_ORYSJ | 3.00E-156 | cDNA clone:J023088F14, full insert sequence {ECO:0000313|EMBL:BAG94601.1} |
| TAIR | AT1G32330 | 5.00E-135 | heat shock transcription factor A1D |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000111 | 1879037 | 1903827 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001670
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00447.16 | HSF_DNA-bind | 43 | 132 | 3.20E-29 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HSF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.090 |
| SRR2545915 | Juvenile tuber | 15.380 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 24.330 |
| SRR5643514 | five period of Gastrodia elata | 21.200 | |
| SRR5643515 | five period of Gastrodia elata | 20.560 | |
| SRR5643524 | five period of Gastrodia elata | 22.360 | |
| SRR5643525 | five period of Gastrodia elata | 21.140 | |
| SRR5643528 | five period of Gastrodia elata | 20.040 | |
| SRR5643658 | five period of Gastrodia elata | 21.360 | |
| SRR5643659 | five period of Gastrodia elata | 24.470 | |
| SRR5643660 | five period of Gastrodia elata | 27.040 | |
| SRR5643661 | five period of Gastrodia elata | 29.450 | |
| SRR5643662 | five period of Gastrodia elata | 32.110 | |
| SRR5643663 | five period of Gastrodia elata | 25.370 | |
| SRR5643664 | five period of Gastrodia elata | 33.250 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 20.830 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 25.060 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 22.800 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 22.450 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 19.940 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 19.620 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.070 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 16.820 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 20.200 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 20.820 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 26.910 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 26.910 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 25.17 |
| Juven | Juvenile tuber | 27.10 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 19.13 | |
| Mother_Juven | Mother tuber of Juvenile | 20.31 |