Detail information of GWHGAAEX001671/evm.TU.scaffold_111.51
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|192361629|ref|YP_001984241.1| | 9.00E-33 | putative methylthioadenosine/S-adenosyl homocysteine nucleosidase [Cellvibrio japonicus Ueda107] |
| nr | gi|672165309|ref|XP_008802554.1| | 1.58E-139 | PREDICTED: 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2-like [Phoenix dactylifera] |
| Swissprot | tr|Q9T0I8|MTN1_ARATH | 2.00E-124 | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 |
| trEMBL | tr|M1GS77|M1GS77_ELAGV | 4.00E-139 | 5'-methylthioadenosine/s-adenosylhomocysteine nucleosidase 1-like protein {ECO:0000313|EMBL:AGE46019.1} |
| TAIR | AT4G38800 | 8.00E-124 | methylthioadenosine nucleosidase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000111 | 1904330 | 1960770 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001671
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01048.19 | PNP_UDP_1 | 26 | 254 | 9.90E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01244 | MTN | Metabolic pathways | map01100 |
| Cysteine and methionine metabolism | map00270 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009116 | Biological Process | nucleoside metabolic process |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 54.470 |
| SRR2545915 | Juvenile tuber | 48.830 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 76.360 |
| SRR5643514 | five period of Gastrodia elata | 87.350 | |
| SRR5643515 | five period of Gastrodia elata | 74.550 | |
| SRR5643524 | five period of Gastrodia elata | 89.700 | |
| SRR5643525 | five period of Gastrodia elata | 100.540 | |
| SRR5643528 | five period of Gastrodia elata | 116.420 | |
| SRR5643658 | five period of Gastrodia elata | 103.620 | |
| SRR5643659 | five period of Gastrodia elata | 55.730 | |
| SRR5643660 | five period of Gastrodia elata | 53.090 | |
| SRR5643661 | five period of Gastrodia elata | 57.530 | |
| SRR5643662 | five period of Gastrodia elata | 40.660 | |
| SRR5643663 | five period of Gastrodia elata | 54.310 | |
| SRR5643664 | five period of Gastrodia elata | 49.840 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 83.760 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 97.110 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 94.100 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 76.480 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 78.450 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 88.060 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 75.870 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 71.210 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 90.560 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 81.140 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 129.500 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 129.500 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 52.53 |
| Juven | Juvenile tuber | 83.63 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 73.88 | |
| Mother_Juven | Mother tuber of Juvenile | 61.59 |