Detail information of GWHGAAEX001672/evm.TU.scaffold_111.52


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41971.00E-161FOG: PPR repeat
nrgi|672159693|ref|XP_008799612.1|0PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like [Phoenix dactylifera]
Swissprottr|Q9M3A8|PP273_ARATH4.00E-162Pentatricopeptide repeat-containing protein At3g49240
trEMBLtr|C5XQ70|C5XQ70_SORBI0Putative uncharacterized protein Sb03g026930 {ECO:0000313|EMBL:EES03220.1}
TAIRAT3G492401.00E-161Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011119617651964008-
Transcript Sequence

Network for GWHGAAEX001672

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13812.5PPR_31091600.0016
PF12854.6PPR_12933221.30E-05
PF01535.19PPR3373590.01
PF13041.5PPR_23694161.60E-15
PF13041.5PPR_24394873.50E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms26.590
SRR2545915Juvenile tuber19.230
SRP108465SRR5643513five period of Gastrodia elata31.200
SRR5643514five period of Gastrodia elata28.280
SRR5643515five period of Gastrodia elata25.900
SRR5643524five period of Gastrodia elata28.670
SRR5643525five period of Gastrodia elata28.540
SRR5643528five period of Gastrodia elata19.970
SRR5643658five period of Gastrodia elata20.630
SRR5643659five period of Gastrodia elata38.530
SRR5643660five period of Gastrodia elata50.090
SRR5643661five period of Gastrodia elata43.830
SRR5643662five period of Gastrodia elata45.500
SRR5643663five period of Gastrodia elata36.510
SRR5643664five period of Gastrodia elata35.330
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_134.620
SRR6049655Rhizomagastrodiae_C368-T10_good_137.410
SRR6049656Rhizomagastrodiae_C368-T07_good_137.000
SRR6049657Rhizomagastrodiae_C368-T07_good_141.540
SRR6049658Rhizomagastrodiae_C368-T04_good_132.820
SRR6049659Rhizomagastrodiae_C368-T04_good_138.290
SRR6049660Rhizomagastrodiae_C368-T01_good_141.790
SRR6049661Rhizomagastrodiae_C368-T04_good_135.050
SRR6049662Rhizomagastrodiae_C368-T01_good_141.100
SRR6049663Rhizomagastrodiae_C368-T01_good_143.520
SRR6049664Rhizomagastrodiae_C368-T10_good_138.420
SRR6049665Rhizomagastrodiae_C368-T10_good_138.420
SRP279888GastroGastrodia elata tuber 32.89
JuvenJuvenile tuber40.98
Mother_GastroMother tuber of Gastrodia elata 14.62
Mother_JuvenMother tuber of Juvenile 18.40