Detail information of GWHGAAEX001675/evm.TU.scaffold_111.55


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|262196624|ref|YP_003267833.1|6.00E-12RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
KOGKOG02261.00E-108RNA-binding proteins
nrgi|672113330|ref|XP_008810451.1|1.40E-127PREDICTED: RNA-binding protein 42 [Phoenix dactylifera]
Swissprottr|Q9SYG4|UBP1A_ARATH2.00E-18Oligouridylate-binding protein 1A
trEMBLtr|F6HBY9|F6HBY9_VITVI8.00E-125Putative uncharacterized protein {ECO:0000313|EMBL:CCB49722.1}
TAIRAT3G045001.00E-108RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011120200512056328+
Transcript Sequence

Network for GWHGAAEX001675

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_11442145.50E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms19.440
SRR2545915Juvenile tuber17.850
SRP108465SRR5643513five period of Gastrodia elata17.090
SRR5643514five period of Gastrodia elata15.900
SRR5643515five period of Gastrodia elata12.570
SRR5643524five period of Gastrodia elata16.650
SRR5643525five period of Gastrodia elata14.420
SRR5643528five period of Gastrodia elata16.760
SRR5643658five period of Gastrodia elata14.450
SRR5643659five period of Gastrodia elata16.900
SRR5643660five period of Gastrodia elata16.220
SRR5643661five period of Gastrodia elata16.960
SRR5643662five period of Gastrodia elata15.230
SRR5643663five period of Gastrodia elata14.240
SRR5643664five period of Gastrodia elata14.300
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_120.930
SRR6049655Rhizomagastrodiae_C368-T10_good_126.060
SRR6049656Rhizomagastrodiae_C368-T07_good_117.850
SRR6049657Rhizomagastrodiae_C368-T07_good_117.840
SRR6049658Rhizomagastrodiae_C368-T04_good_120.020
SRR6049659Rhizomagastrodiae_C368-T04_good_118.870
SRR6049660Rhizomagastrodiae_C368-T01_good_121.260
SRR6049661Rhizomagastrodiae_C368-T04_good_118.890
SRR6049662Rhizomagastrodiae_C368-T01_good_118.490
SRR6049663Rhizomagastrodiae_C368-T01_good_118.220
SRR6049664Rhizomagastrodiae_C368-T10_good_122.060
SRR6049665Rhizomagastrodiae_C368-T10_good_122.060
SRP279888GastroGastrodia elata tuber 19.28
JuvenJuvenile tuber22.62
Mother_GastroMother tuber of Gastrodia elata 15.66
Mother_JuvenMother tuber of Juvenile 20.39