Gene detail

Detail information of GWHGAAEX001678/evm.TU.scaffold_111.59

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|158334857\|ref\|YP_001516029.1\|	3.00E-24	sphingosine kinase 2 [Acaryochloris marina MBIC11017]
KOG	KOG1116	0	Sphingosine kinase, involved in sphingolipid metabolism
nr	gi\|672135899\|ref\|XP_008791629.1\|	0	PREDICTED: sphingoid long-chain bases kinase 1-like [Phoenix dactylifera]
Swissprot	tr\|Q9LRB0\|LCBK1_ARATH	0	Sphingoid long-chain bases kinase 1
trEMBL	tr\|M0SSH4\|M0SSH4_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P27120_001}
TAIR	AT5G23450	0	long-chain base (LCB) kinase 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000111	2095615	2107487	-

Transcript Sequence
>GWHTAAEX001678 AAAAGAAATACTATTTAGACTTTCTCTTAAAAAAATGCATATCTAATGTCTCACGGCCTCTCGGTAGGCGGGCAGCGCCTTTTTCTTCTAAAAGAGGATAAAGGGCCCATTAAGTGGCTGCTTTCTTCTAGTTAATGGTGGTGAAACGGAGATATATCGAGAAGAAGAATCTGGAAGCTCAGAAGCCGAGAAAGAAGTCATCAAATCATGGCGGAGAAGGATTTGCATCGTCTTTCTCGATATGCTTTAGCTCTGGCTGATGTTGGTGATTTGGTTCCCTTGAACGAAGATTAATTGTAGCTGATCGTCCGCCTTGCTTCCTTCTTGGCCATGCTTTGATTCATAACATTTTTCGGAATTCAGTGCTGGTCACATATTGTAACATCTAGAATTTTGGTGCACGAACCAGGATTTCATTAGAAGCTTTCGTAGGATTCGAGCTGAACAACATTGCTTGGTTTTTGAGATGACAAAGGTACATAAGTCTGCCTTCCAGCTTCAGAATATTGTTTCATTGAGAGTATTGGACAAAAAATCACAGCATTCTACGGGAAGCAAGCAGTTTAAAGTAATTACCGGTCAATCAACGTCTCCAGTCTTAATTTCAGAAAAATGTGTCAAAATAAAACCACGTAAACAAAATGAAAAAATTTCAGCTGTTCATGAAGATCCTCACAAAGCCAACAGGCCGGAACATCGCATAGACATTGATGAGCTTTCTGATTTATTGGGATATGATGTTTACTCCGGTAAGCTTACTGTTGTCAAAAGTTCCAAGAGCACAGGTTCTGATGAGCCATCTGGATCAGGAAATGCAAGTTCAGTCAGCACTAATGCTAAACTTACAAGCAAGGCAATGATCTGGGGATCTCAAACACTACTTCTTGAGGATGTAGCATCTGTATCTTATAATACTGGTTTGCGGTATTTTAGTGTGCATGCATATCCTCTCAGTAAAAGAACTGGCGGGCTTTCATATTTTTGTAAGCCAAAGAGAAGCAGAAAGGACTTTCGCTTCTTGGCATCTAGCTCAGAAGAAGCCATTCTTTGGGTTTCTGGATTTGCTGACCTGCAATGCTTTGTTAAATGCTCACCACATCCAATGAATTCATCTAGAACTAAGTCAGCTGAGGATTTGGTTTCAATCAACCCTTTGTCTGATCAGCCATACATAAAATGTAAAAGACCCTCTAAAATACTTGTGATTCTTAATCCAAGATCTGGTCATGGCCGTTCTAGCACTGTGTATTATGGAAAAGTGCAACCAATTTTTGAGCTTGCAGGTTTCCAAATGGAAGTGGTTAAAACTACTGCCGCTGGTCATGCAAGAAAGCTTGCGGCGACCGTTGATATTAATATCTGTTCTGATGGAATTGTATGTGTTGGTGGTGATGGAGTTATAAATGAGGTTCTTAATGGTCTGCTCAATAGAGAGGATAAGAAAGAAACGATATCGGTACCGATTGGCATCATTCCTGCTGGTTCTGATAATTCACTTATTTGGACAGTCTTAGGGATTAGAGATCCAATCACTGCTGCATTATCAATTGTCAAGGGTGGTTTCACACCTACAGATGTATTTGCTGTTAAATGGATCCAGACAGGAGCTGTTCACTATGGAAATACTGTCTCCTATTTCGGTTTTCTTAGTGATGTTTTGGAACTTTCTGACAAGTACCAGAAACGCTTCGGCCCTCTTCGGTACTTCGTGGCTGGTTTTCTAAAGTTTCTCTGCTTGCCCAACTACAGCTTTGATCTGGAGTACCTTCCCGCAACCAAAGAGACCCATCTCAAGCAGAAGAAGCCCATGGACGAGGAGGGGCACAATCCCAACATGTCGGACCTTTATAAGGACATTCTGAGGAGGTCGAGGAGAGAGGGCATCCCTAGAGCCTCCAGTCTATCAAGCATAGAATCCATTATGTCCCCAAGCAGGATTTCGGGGGACTTTGAGACAACAGGAAGCAGCACTCTAGCTGGCAGTGAGCCCTCCGATTTGGTCCGCGGCCTTAGGAAGGGTGTCTTAGGATTTGACAACCAAGCACCCGAATCCAAAATCATCCATCCTAAACTGCGCCCCTCCAGCAGCCCCAATTTGACGAGGACCCGCTCAAAACCTTGGGCCGATCAAAATTTCAGGCTTTCGTGGGCGCCCACAATGAGTTTAAATGACAGGGAAGAAATATCTTCAGCAGTATCGAATCCAGGCCCCGTCTGGGACGTCGAGCCGAAGTGGGACGGCGAAGCGAATCGGGGTTCTGAGGCCGGCTGGGAAGATGGGGCTCTGGAATATGGGGCAGTCTTAGGTAAGGAACCCGTCCCGGAGCTGAGTGAGAAATGGGAGGTTAAGAAGGGGAAATTCCTCGGGATCCTTGCCTGCAACCATTCTTGCAGAACTGTCCAGAGCTTAAGCTCTCAGGTTGTCGCTCCCAAGGCCGTGCACGACGACAACTGCTTAGATTTGCTGTTGGTTCGTGGCAGCGGACGGCTGAGGCTTCTGAGGTTCTTTATCTCTCTGCAGTTTGGCCGGCATCTCTCGCTTCCCTTTGTGGAGTATGTGAAGGTGAAATCCTTGAAACTGAAGCCGACGAGAAACACCAGCAATGGCTGCGGCATAGACGGGGAATTATTAAGCTTAGACGGGCAAGTCGCCTGCTCCATGCTCCCCGGGCAGTGCCTTTTGATTGGCCGCCCTGCTGGACCCCGCCTGCCCAACCAGTAGTATGCCTCTGCATGTTCGAATTTGAGTTTATTGACTGAGTGCTGCTGCCATGCTTCCCCAAAATCTCTTAAAGATGAAATGCCATGGTCAACTATATTTTTTTGAAGATAAATATGTGGTTGGTGGGATTTGAATCCTTGAGCTGTCAGGAATTCAAATTTATGAGCTCAACTACAGAGCCACAATATCATTCACGAAATTGGTCCTTGCATTTGTGGCTATTTTTATATTTTTGGGAGACTTGGAGACATTTGTTGGGAGGCATAGCAACTTTCTTGTTGATTGGAGCATTGAAAAGGCAACTTTGTTTTTTTACAAAACTGCCACTTAGTCTTATGGCCACCTTAGTGATGATTTTTAGGTGGTAATTTTGTAAAAAATATAAGATTTTTAGTGTTATTATTACATTGGGGTCTGATTATGAAATCTAAGTTGTGGTTTATATTTTCCAAATTGTATAAGCAAAAGGAAAATGCTTGAATATCTTGATAAATTTCAGTTATTATGAGTTAAACATTAATATTAGATGTTTTAATGATGTTGTGGAATTGGTTGGGGTATCAATGAGGGCATTGTAGCAATTTCCTAAACAAATTTGTAATAAAAATTTGATGTAGATGATGTATCAATCTTTAGATATATGAATTTGATTGATTTGATGCTT

Network for GWHGAAEX001678

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00781.23	DAGK_cat	243	373	4.20E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016301	Molecular Function	kinase activity
GO:0003951	Molecular Function	NAD+ kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	57.470
SRP064423	SRR2545915	Juvenile tuber	67.290
SRP108465	SRR5643513	five period of Gastrodia elata	35.740
	SRR5643514	five period of Gastrodia elata	34.150
	SRR5643515	five period of Gastrodia elata	36.990
	SRR5643524	five period of Gastrodia elata	35.830
	SRR5643525	five period of Gastrodia elata	59.010
	SRR5643528	five period of Gastrodia elata	49.810
	SRR5643658	five period of Gastrodia elata	55.910
	SRR5643659	five period of Gastrodia elata	51.380
	SRR5643660	five period of Gastrodia elata	56.570
	SRR5643661	five period of Gastrodia elata	50.340
	SRR5643662	five period of Gastrodia elata	58.790
	SRR5643663	five period of Gastrodia elata	60.790
	SRR5643664	five period of Gastrodia elata	65.480
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	48.530
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	37.490
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	43.770
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	54.050
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	48.240
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	53.540
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	44.560
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	50.100
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	35.740
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	37.370
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	34.830
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	34.830
SRP279888	Gastro	Gastrodia elata tuber	54.18
	Juven	Juvenile tuber	29.44
	Mother_Gastro	Mother tuber of Gastrodia elata	41.38
	Mother_Juven	Mother tuber of Juvenile	21.37