Detail information of GWHGAAEX001681/evm.TU.scaffold_111.62
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3108 | 2.00E-53 | Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit |
| nr | gi|672112005|ref|XP_008803558.1| | 3.10E-110 | PREDICTED: replication protein A 32 kDa subunit A-like [Phoenix dactylifera] |
| Swissprot | tr|Q6K9U2|RFA2A_ORYSJ | 2.00E-74 | Replication protein A 32 kDa subunit A |
| trEMBL | tr|M0UBF8|M0UBF8_MUSAM | 2.00E-103 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP22500_001} |
| TAIR | AT2G24490 | 2.00E-53 | replicon protein A2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000111 | 2178178 | 2189241 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001681
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01336.24 | tRNA_anti-codon | 114 | 185 | 1.00E-06 |
| PF08784.10 | RPA_C | 218 | 312 | 2.10E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10739 | RFA2, RPA2 | DNA replication | map03030 |
| Nucleotide excision repair | map03420 | ||
| Mismatch repair | map03430 | ||
| Homologous recombination | map03440 | ||
| Fanconi anemia pathway | map03460 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.130 |
| SRR2545915 | Juvenile tuber | 13.270 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 17.800 |
| SRR5643514 | five period of Gastrodia elata | 15.120 | |
| SRR5643515 | five period of Gastrodia elata | 12.220 | |
| SRR5643524 | five period of Gastrodia elata | 15.190 | |
| SRR5643525 | five period of Gastrodia elata | 13.930 | |
| SRR5643528 | five period of Gastrodia elata | 7.160 | |
| SRR5643658 | five period of Gastrodia elata | 12.140 | |
| SRR5643659 | five period of Gastrodia elata | 19.050 | |
| SRR5643660 | five period of Gastrodia elata | 20.140 | |
| SRR5643661 | five period of Gastrodia elata | 19.210 | |
| SRR5643662 | five period of Gastrodia elata | 13.460 | |
| SRR5643663 | five period of Gastrodia elata | 18.750 | |
| SRR5643664 | five period of Gastrodia elata | 12.720 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.390 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 24.390 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 25.680 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.510 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.940 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.300 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.260 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.100 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 27.130 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 20.970 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 32.580 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 32.580 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.32 |
| Juven | Juvenile tuber | 18.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.71 | |
| Mother_Juven | Mother tuber of Juvenile | 11.94 |