Gene detail

Detail information of GWHGAAEX001682/evm.TU.scaffold_111.63

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1012	0	Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain
nr	gi\|694997217\|ref\|XP_009398233.1\|	0	PREDICTED: synaptotagmin-2-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|B6ETT4\|SYT2_ARATH	1.00E-16	Synaptotagmin-2
trEMBL	tr\|M0S0T6\|M0S0T6_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P17780_001}
TAIR	AT3G19830	0	Calcium-dependent lipid-binding (CaLB domain) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000111	2210321	2229478	+

Transcript Sequence
>GWHTAAEX001682 GTCCATCGCAAAAAAGTTCCGCGCTTGCAGCACTTTATCCTTCTCTTCGATCCTCATCGCTGCCTGAACCCTATCCCGACTCTAGTGCGGCTTCATTTATTCCTCTCAATAGCCACCGTAAACTTGGGCTTCAACCTCACCCTTCTTTGCTCTTTCATGAATCACCCCCGCGATGCTCTCGCCGTGGGATCCAGTCTCCCGCGGTTCCACCTTTAAGCTCCGCTCCAGATTTTTTAATGAATGTTCCTGCGGAATTGTCTGCCTGAGATTTCGCATATTGCTTCCAGCACCTTTTTCCCTTGGCGATTGCAGAAGGAATTGGAGTTGCCTGTCAGTAAGCACGAAATCCGGGCGTTCGAAGCTTCTAAGCTCCGCCATGAACAGAGAAAGAGCAGAGAGGCTTATGGTCTCGAAGAAACTCTCTGACGCTGAGCTTTTGCTGATGGAATCGTCCAAATACACGAGATGTGGGGAGGATCCTTTGGTTGCAAAGCTGAGAACGCAGCTCGGATTTTTCCATCCGATCCCTTTGCTTCCCATCAACAGGGCAATCGCGAGCTCCTTTGTGCTGTTCTTTTTCATTGGGGTTTTATTCGAGAAGCTGTGGATCTCAAGGACGTCGAGTAAGCATGCGCGGGAGACTCGCGAAGGGATGTTTCCGCAGGTGCCCGCCAGCTTATCGAGGTTTCTGGAGAAGGATCTTAAGAGGAAGGAGTCTGTGGAGTGGGTCAATATGGTGTTGGGGAAGCTGTGGAAAGTTTATCGACCCGGTATTGATAATTGGATTACAGGGCTTCTTCAGCCCGTGATTGATAATCTCCAGAAACCTGGGTATGTGCAGAGTGTAGAGATTAAGCAGTTTTCGCTCGGAGACGACCCTTTGTCGGTTAGGAATGTGGAGCGGATAACTTCTCGGCGAGCCACTGATTTGCAGTACCATATTGGTCTTCGGTATACTGGTGGAGCTCGTGTGCTTCTCTCCTTATCCATGAAGTTTGGTATTTTTCCCTTTTCTGTTCCTGTTGGAGCTCGTGATTTTGATGTTGATGGGGAACTTTGGGTTAAATTACGATTAATACAAACTGAACCTTATGTGGGTGCTGTTTCATGGGCTTTTGTTTCCATGCCAAAGATTAAGTTTGAACTGTCACCATTTCGTCTGTTCAACTTGATGGGAGTACCTGTTGTTTCAATGTATTTGAGGAAGCTTCTTACAGAAGATTTACCTGGTCTTTTTGTTCGTCCAAGAAAGATTGTCCTTGATTTTCAGAAGGGCAAAGCTCTTGGCCCTGTTACAAATAATTTCAAAGCCGACACAACTGAAGAACATAGCAAGACTTTTGTTGGGGAGCTATCTGTGACTCTTGTTGATGCCCGCAAACTTGCTTTCATGAGAATTGGCAAGACAGATCCATATGTTGTTCTAAGACTAGGTGATCAGGAGCTTCGAAGTAAAAAGAACAGCCAAACAACTGTCATTGGACCGCCAGGGGAGCCAATCTGGAATCAAGATTTTCTCCTATTTGTAGCGAATCCTAGAAAACAGAGATTAAAAATTGAAGTTATAGATTCTTTTGGTTTCAGTGATTTCACTCTCGGGAAAGGGGAGGTTGAACTTGGATCACTTCAAGATACAGTGCCAACTGATAGGATTGTGACACTTCAAGGTGGCTGGAGATTATTTGGACGGCAGTTCTCGGGGGAGATTTTTCTTCGTCTGACATACAAGGCATATGTTGAAGATGAAGATGATGATGAACAGGTCGAAAGGGAAGCCGAAAAGGATTCATCCGATGACGAGGACTTAATTTATGATCAAGCAAATGACCTTTCTGAAAAGAGGGATAGTAGTTCCAGCTATACAGGAGAAAGAGATTCTTTTATGAATGTCTTGGCTGCTTTGCTTGTGAGTGAGGAATTTAAGGGCATAGTGACATCTGAAACAGGCTATCCAAAATCATCCAATGAATCTGATTATCCAGGATCAACTGCTAATATATCCCCGCCTAAGCCGGCAACTGCTTCGAAGAGCTCTCATGGCTCTGCGTTAATATGGCTTGTTGTTATAACAAGTTTAGCTTTGTTGGTTGCTTTTAATGTGGCCAGTTCAGGATTTTTCAATCCATAGTTCAAATATGATCAGGAAATTTGTGCAAATCAGGTAATAATATGGATTGTCTTTTAGGAACTATAAATAATGACTTTTTTTTATACTCAAATCAAGTAATTGCTGTTTGATATGCAAACAATAAAGATTTGAGCTATCAAATAGTTGCAAGTTTTTTCAATGGATAGATGGTGTAGAAAATTATTTAATTGGCTGCAGCAGTTTACAGCAAATCATCAATCACATTATTATGAAGCTGTCAGCATTGGAAGAACAAAACAAATGGTCTTTTAATAAAGAAAAAAGTTGTTTGGCTCCAAAATAGCTCCTAAAAATTTTGGATGATTATGATTTGTATTTAA

Network for GWHGAAEX001682

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00168.29	C2	392	491	2.70E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008289	Molecular Function	lipid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.850
SRP064423	SRR2545915	Juvenile tuber	8.740
SRP108465	SRR5643513	five period of Gastrodia elata	10.100
	SRR5643514	five period of Gastrodia elata	8.270
	SRR5643515	five period of Gastrodia elata	9.130
	SRR5643524	five period of Gastrodia elata	9.280
	SRR5643525	five period of Gastrodia elata	17.360
	SRR5643528	five period of Gastrodia elata	17.560
	SRR5643658	five period of Gastrodia elata	16.220
	SRR5643659	five period of Gastrodia elata	11.540
	SRR5643660	five period of Gastrodia elata	12.320
	SRR5643661	five period of Gastrodia elata	11.660
	SRR5643662	five period of Gastrodia elata	14.220
	SRR5643663	five period of Gastrodia elata	12.730
	SRR5643664	five period of Gastrodia elata	11.960
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.930
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.590
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	9.140
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.860
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.720
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	11.070
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.650
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.900
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.890
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.210
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.280
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.280
SRP279888	Gastro	Gastrodia elata tuber	12.70
	Juven	Juvenile tuber	10.36
	Mother_Gastro	Mother tuber of Gastrodia elata	15.61
	Mother_Juven	Mother tuber of Juvenile	17.48