Detail information of GWHGAAEX001683/evm.TU.scaffold_111.64


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41971.00E-58FOG: PPR repeat
nrgi|695059815|ref|XP_009418280.1|3.28E-133PREDICTED: pentatricopeptide repeat-containing protein At1g55890, mitochondrial-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q9SAB4|PPR33_ARATH3.00E-59Pentatricopeptide repeat-containing protein At1g11630, mitochondrial (Precursor)
trEMBLtr|K3Z104|K3Z104_SETIT4.00E-95Uncharacterized protein {ECO:0000313|EnsemblPlants:Si020221m}
TAIRAT1G116301.00E-58Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011122320262233539-
Transcript Sequence

Network for GWHGAAEX001683

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13041.5PPR_21662145.50E-11
PF12854.6PPR_12673001.80E-11
PF01535.19PPR3163360.022
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms10.300
SRR2545915Juvenile tuber10.590
SRP108465SRR5643513five period of Gastrodia elata8.670
SRR5643514five period of Gastrodia elata13.450
SRR5643515five period of Gastrodia elata10.210
SRR5643524five period of Gastrodia elata13.210
SRR5643525five period of Gastrodia elata4.350
SRR5643528five period of Gastrodia elata3.560
SRR5643658five period of Gastrodia elata3.460
SRR5643659five period of Gastrodia elata12.590
SRR5643660five period of Gastrodia elata16.510
SRR5643661five period of Gastrodia elata13.810
SRR5643662five period of Gastrodia elata11.720
SRR5643663five period of Gastrodia elata12.310
SRR5643664five period of Gastrodia elata12.410
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_112.980
SRR6049655Rhizomagastrodiae_C368-T10_good_114.450
SRR6049656Rhizomagastrodiae_C368-T07_good_113.090
SRR6049657Rhizomagastrodiae_C368-T07_good_113.490
SRR6049658Rhizomagastrodiae_C368-T04_good_19.590
SRR6049659Rhizomagastrodiae_C368-T04_good_19.810
SRR6049660Rhizomagastrodiae_C368-T01_good_113.780
SRR6049661Rhizomagastrodiae_C368-T04_good_113.580
SRR6049662Rhizomagastrodiae_C368-T01_good_119.520
SRR6049663Rhizomagastrodiae_C368-T01_good_116.800
SRR6049664Rhizomagastrodiae_C368-T10_good_119.020
SRR6049665Rhizomagastrodiae_C368-T10_good_119.020
SRP279888GastroGastrodia elata tuber 13.19
JuvenJuvenile tuber31.03
Mother_GastroMother tuber of Gastrodia elata 14.00
Mother_JuvenMother tuber of Juvenile 17.00