Gene detail

Detail information of GWHGAAEX001684/evm.TU.scaffold_111.65

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743834353\|ref\|XP_010935508.1\|	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105055407 [Elaeis guineensis]
trEMBL	tr\|M0U224\|M0U224_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P20650_001}
TAIR	AT3G19870	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000111	2241255	2245207	-

Transcript Sequence
>GWHTAAEX001684 TTTTTTCCTCTCTAAATCGATTCCCAATTTCGTTTAGGAGGAAGGAATGAAGGGTTAATTCGGTGGATCGCCCATTCGCAAGTTCCGTCGATCACAGAGTTTTCCGGCGATCACCGGCGACAAACCTGAAGCAGGCGATCTCTATAATGGAGAAGTCGGCATCCGTCAAGAGCTCTTACGGTTCCGTTCCCGCCGCGGAGCTCCAGTTATCTTTTCAAGAATGGGAAACCCTAATCGACGATTTCCAGTCCGGCGATCCTTCGAACCGTTCCCGATGGCTCTCCTTCCCTCTCCTGGATCTCACCCTCAACTCCCTCATCCGCAAAGATTTTCCGGTGTCTCTCAAATCCCAGCTTCTGGTCTTCCTCGAAGATTCATCCGATCTCCTCTTTCGCCCCTCTCCCTCCTCTTCCCTCCCACCTCTCATCGATTCCCTCCGCTCTCTCCTTCAGCAGCATCCCTCCGAAGCCGTCCTCAGAGAGCAGGCTTTGGTTTCCGCGACCACGATCGCAATCTCTTCGCTCGACGCGCCCTCCCCTGCCCTCATTGATCCTCTCGCCGAGCTCCTCCTGTCCATCGCAAACCGCCCGAACCATGGACCGGATCGCCATACGCGCTCCGTTGCTTGCGAGTGCCTTCGTGAGCTCGAGCTCGCTTTCCCGCTTCTCCTCTCCGACACGGCTGGCCACCTCTGGACCCTCGCTCACGCCGAGCGCAGCCATGTTGCCCAGTCTTACATGCTCCTACTCGCCACGACCATCGCCTCCATCTGCCGTCACTCTCTCCTTGCATCCCCCTCTTCCATTCTCTCTACTGCAGTCACTCTCGTCCCCTTCAACTCCCCTAGCGCTGTTATATCCCCCCGCATCTCTTCCGAACCCTCTGAAACCAACCTTCGGGAGCTCCGACGGATCACTGCCTTCCTCCTCGAGCATCCCCATGCTCTGACCCCTTGCGCAATCTTGGAACTTGTATCAGTGATGGCCGACATTGTCGATGCGCTCGAGCGACGCATACCTGCAGTGGCTGCTCTTTTGAAGGTGCAGTTTTCTGGACTGTTTTACTGCTATGATCCTATCCTCTGCCATGTTGTTTTCACGCTGTATTCACGCTTCTCAGACGCGTTTACGGGGGATGACGAGATGCGTATTTTGGGTCGCCTCGCCCTCATCCCCATGGAAGCCCACCAGCCGCTTGTTTTTAGGCTGCTCGCTGTTCACTGGCGCTTGGGGTCGCCTCGGCTTTCTCGTGATAAGGGAATTCTTTCTTCCGTTGCGCATTGCTTGTATCCCTCTTTTTTCGATCCGCTTGCTTTGAAAGCTGCGAAATTGGATGTCCTCGCTTGCGTTGCTTCCCAAGCTAATCATCTGCAAAGCCGAGGGAAGAATGACGAAGGCTCCGTGGTAGTCAAGCTGTTTGAAGATGGATTAATCTGCGTTTCTGCATTCAAATGGCTTCCTCCCTGGAGCACCGAGACTGCCATAGCTTTTAGGGCTTTTCACAGGTTCTTGGTTGGAGTTTCTCCACACCATGGCAGTAGTGGCTTGTCCAATGATGAGGTGCATGCAGTTTTTGATACTCCCATTTTCCAAACCTTGCAGATTATGCTGGTGGATCTAGCATTCACTTATCATGGGTTGGTTCCAGTGGTTGCTGCATTTGTTGATCGTCTAATGGGTTGTAAGGGACATCAAATAGTTGGAGGGCGTTTTCTCCAGTTACTGGATGAGAGACTTCTTCCAAAGCTGGATAAAAGCTTTCTGCTGGCTTCTTACTTTCCAATATTTGACAGGATTGCGAGAAATGATACAATACCTCCTGGTGGTTTGCTTGAATTGCTCACAAAGCATATGCTTTATCTTGCTGAAAAGCATGGCTCAGAGACTGTCTTGAGATCATGGTCTCATGGAAGTAAAATTTTGGGCATTTGCAGGACAATGATGGTGCATCATCAAAGCTCGCGGATTTTCACTCGTTTGTCTCGTCTTCTTGCCTTCATCACCCAATGCTTCCCTGACCTGGAAGTTAGAGACAATGCAAGGATTTACCTGAGAATGCTTTTATGCATCCCGGGAAAGAAGCAAAGGAAAATAATGAATTTTGGAGGGCAACACTCAGTGATGTCACCTTCTCCACATCCAGCGTCGCTTTTCCAATTTTCTTCGACGTGGCAACCACGTGATCCTAAGAAATTGTCTGGAATTTCAGAGTACATTCTTCTTGTGAGGGAGATTCCGCCTCTTGTTAAGCAATCATGGTCATTAACTCTTTCCAATTTTGAAATCGGAAAAAATGAGATAAATTACTTTGAAGGGATCGAAGACAGTGTTATTTCTTCCACCGCACAAGTCAATGAAGCCGACGTAACTATAGAGAGGATTGATTTACAGGAGGCTCTTCGAGTGACAGATTCAAAAGTTGCTGAAAGTTTAAGAGTTTTGCGAAGGCATTTTGCTTGTATTCCAGATTATCGCCACACTTCTGGGATTAAGATTGGTATTCCTTGTTTATTGAGGTTTGAGGCAGAGTTATTTAATAAGGTTTGGGGATTTGATTCACCTATACTAGGCTTTGACTCAATGAACAATCTTCCAGCTTTGTATGCAATTTCTATCACTTTTAAGTCTACTGCAAAGTATGGGTCTATTTCAACTTATCGTGTTCCTTTTCTTCTCGGTGAGCCTTCAAATACTGGGCTAGAAGTTATCCCCATTAAACATGATGCCCAAGAAGATTTAAGATTTCAAGCATCAGTTGTTATTGAACTCGAACCTAGAGAGCCCATGCCTGGACTTGTTGATACTGAATTAACAGCAAATGTTGAGAATGGTCAAATTTTATCTGGCTTGCTTCAAAGTATTACTGTTGGAATTGAGGACATGTTTTTGAAGGCTATTTTACCGTCAGATGTAGAAGATGATTTGGTTCCACACTACTATCTTGATCTTTTTCATGCTTTATGGGAAGCTTGTGGAAATTATGCTAGCGCACTGAGGGAAACTTTTCCATTGAACGGAGGTAAAGGGGCTGCAGCAATCCTTGGAACACGATCAGTGAAGCTTCTTGATGTTTCTTCTGATTCTTTCATAAGTGCAATTGAACGGAATTTGGCACCATTTGTTGTTAGTGTTATTGGTCAACCACTAATGAGTATAGTAGGGAGTAATGGTGTTATTAGAAATGTTATATTCGAGGACAATTCTGCAGTTTTTTCTGAAACTGATAACAAAACTTTAGTATCCTACTCAGAAAATGAGCCTCTTCAACTTGAATATACTCAAAATGAAATATCATTATGGTCTCCTCGAGAAACTAGTAAAAGAAGCCTCGGTATGTTTCTTGTTCTAATATTCTTACCTCCTAGGTTTCATTTACTTTTCCAAATGGAAGTAGGTAATATTTCAACGCTAGTCAGGATTAGAACTGATTATTGGCCATGCCTTGCTTATGTTGATGAATATTTGGAATCTTTAATAACATAGATTTGAGAAAAGTGTGTTTTCTCTTTTGCCACACTTTTATTCTTACGTGGCTTTGTTTTTTTGGAAGCTTTCTTTCGTTTATTTGATGTAACTTCTGATTCTCTCATAAGTGCATTTGAATGGAATTTGGCACCATTTTTTGTTAGTGTTATTGGTCAGCCACTAATGGGCATTGTAGGAGGTAATGAGGTTCTTAGAAATGTTATATTTTCTGCAATTGTTTTCTTAAACAGATCACAAAAAACTTTGGTCTCGTACAAAAAAATAAGCCTCTTCAATTTAAATAAGCCCAAGGTGAAATAAGCCTCTTCAAG

Network for GWHGAAEX001684

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX001684
MEKSASVKSSYGSVPAAELQLSFQEWETLIDDFQSGDPSNRSRWLSFPLLDLTLNSLIRKDFPVSLKSQLLVFLEDSSDLLFRPSPSSSLPPLIDSLRSLLQQHPSEAVLREQALVSATTIAISSLDAPSPALIDPLAELLLSIANRPNHGPDRHTRSVACECLRELELAFPLLLSDTAGHLWTLAHAERSHVAQSYMLLLATTIASICRHSLLASPSSILSTAVTLVPFNSPSAVISPRISSEPSETNLRELRRITAFLLEHPHALTPCAILELVSVMADIVDALERRIPAVAALLKVQFSGLFYCYDPILCHVVFTLYSRFSDAFTGDDEMRILGRLALIPMEAHQPLVFRLLAVHWRLGSPRLSRDKGILSSVAHCLYPSFFDPLALKAAKLDVLACVASQANHLQSRGKNDEGSVVVKLFEDGLICVSAFKWLPPWSTETAIAFRAFHRFLVGVSPHHGSSGLSNDEVHAVFDTPIFQTLQIMLVDLAFTYHGLVPVVAAFVDRLMGCKGHQIVGGRFLQLLDERLLPKLDKSFLLASYFPIFDRIARNDTIPPGGLLELLTKHMLYLAEKHGSETVLRSWSHGSKILGICRTMMVHHQSSRIFTRLSRLLAFITQCFPDLEVRDNARIYLRMLLCIPGKKQRKIMNFGGQHSVMSPSPHPASLFQFSSTWQPRDPKKLSGISEYILLVREIPPLVKQSWSLTLSNFEIGKNEINYFEGIEDSVISSTAQVNEADVTIERIDLQEALRVTDSKVAESLRVLRRHFACIPDYRHTSGIKIGIPCLLRFEAELFNKVWGFDSPILGFDSMNNLPALYAISITFKSTAKYGSISTYRVPFLLGEPSNTGLEVIPIKHDAQEDLRFQASVVIELEPREPMPGLVDTELTANVENGQILSGLLQSITVGIEDMFLKAILPSDVEDDLVPHYYLDLFHALWEACGNYASALRETFPLNGGKGAAAILGTRSVKLLDVSSDSFISAIERNLAPFVVSVIGQPLMSIVGSNGVIRNVIFEDNSAVFSETDNKTLVSYSENEPLQLEYTQNEISLWSPRETSKRSLGMFLVLIFLPPRFHLLFQMEVGNISTLVRIRTDYWPCLAYVDEYLESLIT

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	16.430
SRP064423	SRR2545915	Juvenile tuber	10.900
SRP108465	SRR5643513	five period of Gastrodia elata	7.970
	SRR5643514	five period of Gastrodia elata	5.720
	SRR5643515	five period of Gastrodia elata	6.250
	SRR5643524	five period of Gastrodia elata	6.430
	SRR5643525	five period of Gastrodia elata	7.780
	SRR5643528	five period of Gastrodia elata	5.630
	SRR5643658	five period of Gastrodia elata	6.950
	SRR5643659	five period of Gastrodia elata	7.330
	SRR5643660	five period of Gastrodia elata	8.880
	SRR5643661	five period of Gastrodia elata	7.390
	SRR5643662	five period of Gastrodia elata	7.700
	SRR5643663	five period of Gastrodia elata	7.820
	SRR5643664	five period of Gastrodia elata	7.600
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.520
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.960
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.890
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	15.700
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	14.250
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	17.330
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.420
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.660
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.990
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.570
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.220
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.220
SRP279888	Gastro	Gastrodia elata tuber	7.17
	Juven	Juvenile tuber	19.16
	Mother_Gastro	Mother tuber of Gastrodia elata	7.64
	Mother_Juven	Mother tuber of Juvenile	13.50