Gene detail

Detail information of GWHGAAEX001687/evm.TU.scaffold_111.68

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|719963626\|ref\|XP_010250318.1\|	1.13E-155	PREDICTED: BTB/POZ domain-containing protein At3g19850-like [Nelumbo nucifera]
Swissprot	tr\|Q9LT24\|Y3985_ARATH	1.00E-122	BTB/POZ domain-containing protein At3g19850
trEMBL	tr\|M0U2Y6\|M0U2Y6_MUSAM	1.00E-157	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P23790_001}
TAIR	AT3G19850	9.00E-113	Phototropic-responsive NPH3 family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000111	2286146	2289208	-

Transcript Sequence
>GWHTAAEX001687 ACCACCACTACTCTAGTGCTGATATAAATCCACCATCTTCACGTGCTTCTTGGCAGATTTCTTCACTTTCCCTCCGCCCTCTTTTTTGTCCTCCTCCTCCTCCTCCTCCTGCTTCCCGTAGCATATCCAGGCATGAAAGAGGTCTGCGACCTGAAGATCGAAATCAACGGGCATCACACCTTCTTCCTCGATCAGAGCATCCTCTACGGCTTCTCAGGGAGGCTGAGGAAGATGAAAGGCTTGGTCCGAATGCGAGGCTTTCCCGGCGGGCCGGAGGGATTCGAGCTGGCTTCCAGATTCTGCTACGGCAATGGCAGAGTCCAGATGAACCCCTCAAACATCGCAGCACTCCACTGCGCAGCCGTATACCTAGAAATGCAGAGCCTGAAGGCGCAGACGGAGGCATTTCTTATGGAGGGGGTCGGTTGCTGGAGCTGGGGAGACGTCGTCAGCTCGCTCAAATCCTGCGAGCCCTTTTTCGCAGAGGCGGAATCGGCCGGAATCTCTCAAAAGCTGGCATCCTGTCTCGTCTCCAAGGCGCTGGAGCCCGCCGGCGGGTCGCCGCGGTCCTCGGCTTCGCCTTCGTCGTCGTCGTCGGCGGAAGCCGGCGGCGGCAAGGAATGGTGGTTCGAGGAATTGGCGGCGCTGGGGCCGCGCGCTGTGGAGAGGATTGCGGAGGAAATGAGGGGCTGCGGGAGGGATCTTGTTAGAACGAGATTCCTGCTTTATTACCTGAAATCGATGCCACATAGGAGGAGCGTTCAGCTGCAGGGAATTGCGGAGAGGGCGGTGGATGGAATGGTGGAATGCGGGAGGGATGCATTCAGCTGCAGGGGATTGTTTTGGGTTCTGAGGCTAGTTTCGAGGATGGGGATTGGGAGAAAAGGAAGGGGGAGGGTTGAGTGGATGATTGGGGCTTGTTTAGACATGGCTGAATTGGATGATTTGCTTGTTTCTGGGCACGGGGAAGAGGATTTGGAAGAAGAAGAAGAAGACAAAGAAGAAGAAGAGGGTGTTTATGATGTGAGTATGGTGATGAGATTGGTGAGGGTTTTTGTTGGAGGGGAGGTGTCTGCGCAGAGGATGAAGAAGGTGGGGAGGCTGATGGATAAGTACTTGAGGGAGATCTCTCCTGACCACGGATTGAAGCCTTCTAAGTTCATGTCTGTGGCTGGGAGCTTGCCTGATTATGCTAGGGACTGCTGTGATGGGGTCTACAGGGCTCTGGAAATCTTTCTTGAGTCGCACCCGGACATGTCGCTGGAGGAGCGCACGAGATTGTGCCAGTGCCTAAACTACGAGAAGCTCACGTTGGAAGCCTGCAAAGACCTCGCAAAGAACCCGAGGATCCCGCCGGGCGTCGCGGTCCAAGCTTTGATCTCGCAACAATCCAAGCCCCAGACGAGAACAAGCGAGAAGACGCGTGGAAGGGCAGCAGAACTTGAAAATAGCTGCAATGAGATGAGAGGTCAGATGTTCAAGTTGGAAAGAGGAAGGTATGCTATCAGCAGCCCTGCATACTATAGCAGCAAGGGCATACCCAGGCTTTGCTGATCCTTCATTATGCAGTAAACCCACATTCTGGCTATAAATGAACTTGTGTGCATAAAATGTAATAAACATACATATATTAATCATGCTTTACATCAAATTATAGTTTATATTTATGACTTGTTGCCCATCAGCATTCATTATTTACTTGTACAATGAATATTGTTGATTCACTCTATAGACATAATGCTACTTGCACTTTGATTGTATAGTTGCAAGCAATATTTTCAATTTTGCTTCGTATATTTAATTATTATAATATATTTAATTTCAATTATGG

Network for GWHGAAEX001687

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03000.13	NPH3	163	397	4.90E-48

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.480
SRP064423	SRR2545915	Juvenile tuber	2.990
SRP108465	SRR5643513	five period of Gastrodia elata	53.410
	SRR5643514	five period of Gastrodia elata	38.040
	SRR5643515	five period of Gastrodia elata	41.920
	SRR5643524	five period of Gastrodia elata	42.060
	SRR5643525	five period of Gastrodia elata	13.640
	SRR5643528	five period of Gastrodia elata	24.100
	SRR5643658	five period of Gastrodia elata	10.740
	SRR5643659	five period of Gastrodia elata	3.740
	SRR5643660	five period of Gastrodia elata	2.790
	SRR5643661	five period of Gastrodia elata	5.130
	SRR5643662	five period of Gastrodia elata	5.880
	SRR5643663	five period of Gastrodia elata	4.010
	SRR5643664	five period of Gastrodia elata	4.030
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	16.810
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	16.580
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	20.400
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	17.210
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	22.780
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	22.220
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	20.200
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	18.840
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	24.600
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	20.730
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	34.810
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	34.810
SRP279888	Gastro	Gastrodia elata tuber	7.36
	Juven	Juvenile tuber	26.06
	Mother_Gastro	Mother tuber of Gastrodia elata	51.60
	Mother_Juven	Mother tuber of Juvenile	69.04