Detail information of GWHGAAEX001688/evm.TU.scaffold_111.69
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2066 | 0 | Vacuolar assembly/sorting protein VPS41 |
| nr | gi|743852140|ref|XP_010940318.1| | 0 | PREDICTED: vacuolar protein sorting-associated protein 41 homolog isoform X1 [Elaeis guineensis] |
| Swissprot | tr|P93231|VPS41_SOLLC | 0 | Vacuolar protein sorting-associated protein 41 homolog |
| trEMBL | tr|D7SN86|D7SN86_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI17115.3} |
| TAIR | AT1G08190 | 0 | vacuolar protein sorting 41 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000111 | 2293203 | 2344516 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001688
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00637.19 | Clathrin | 615 | 757 | 2.70E-19 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K20184 | VPS41 | Autophagy - yeast | map04138 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016192 | Biological Process | vesicle-mediated transport |
| GO:0006886 | Biological Process | intracellular protein transport |
| GO:0046907 | Biological Process | intracellular transport |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 49.010 |
| SRR2545915 | Juvenile tuber | 45.860 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 34.740 |
| SRR5643514 | five period of Gastrodia elata | 34.710 | |
| SRR5643515 | five period of Gastrodia elata | 33.620 | |
| SRR5643524 | five period of Gastrodia elata | 35.580 | |
| SRR5643525 | five period of Gastrodia elata | 47.890 | |
| SRR5643528 | five period of Gastrodia elata | 43.250 | |
| SRR5643658 | five period of Gastrodia elata | 51.570 | |
| SRR5643659 | five period of Gastrodia elata | 36.510 | |
| SRR5643660 | five period of Gastrodia elata | 37.670 | |
| SRR5643661 | five period of Gastrodia elata | 38.170 | |
| SRR5643662 | five period of Gastrodia elata | 35.020 | |
| SRR5643663 | five period of Gastrodia elata | 34.740 | |
| SRR5643664 | five period of Gastrodia elata | 36.190 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 37.160 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 30.630 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 39.880 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 40.150 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 45.540 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 49.740 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 43.210 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 48.070 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 44.040 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 44.620 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 37.580 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 37.580 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 41.52 |
| Juven | Juvenile tuber | 42.79 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 42.20 | |
| Mother_Juven | Mother tuber of Juvenile | 36.93 |