Detail information of GWHGAAEX001690/evm.TU.scaffold_111.71
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3219 | 2.00E-62 | Transcription initiation factor TFIID, subunit TAF11 |
| nr | gi|697170297|ref|XP_009594063.1| | 8.79E-79 | PREDICTED: transcription initiation factor TFIID subunit 11 [Nicotiana tomentosiformis] |
| Swissprot | tr|Q9M565|TAF11_ARATH | 7.00E-63 | Transcription initiation factor TFIID subunit 11 |
| trEMBL | tr|A0A067KAP7|A0A067KAP7_JATCU | 5.00E-79 | Uncharacterized protein {ECO:0000313|EMBL:KDP33286.1} |
| TAIR | AT4G20280 | 2.00E-62 | TBP-associated factor 11 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000111 | 2361233 | 2382285 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001690
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04719.13 | TAFII28 | 97 | 182 | 6.00E-32 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03135 | TAF11 | Basal transcription factors | map03022 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006367 | Biological Process | transcription initiation from RNA polymerase II promoter |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.430 |
| SRR2545915 | Juvenile tuber | 5.630 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.570 |
| SRR5643514 | five period of Gastrodia elata | 8.730 | |
| SRR5643515 | five period of Gastrodia elata | 7.390 | |
| SRR5643524 | five period of Gastrodia elata | 9.310 | |
| SRR5643525 | five period of Gastrodia elata | 5.760 | |
| SRR5643528 | five period of Gastrodia elata | 10.700 | |
| SRR5643658 | five period of Gastrodia elata | 8.470 | |
| SRR5643659 | five period of Gastrodia elata | 4.890 | |
| SRR5643660 | five period of Gastrodia elata | 5.690 | |
| SRR5643661 | five period of Gastrodia elata | 5.140 | |
| SRR5643662 | five period of Gastrodia elata | 8.240 | |
| SRR5643663 | five period of Gastrodia elata | 4.580 | |
| SRR5643664 | five period of Gastrodia elata | 6.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.840 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.310 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.740 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.780 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.740 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.910 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.200 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.490 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.420 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.540 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.490 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.490 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.63 |
| Juven | Juvenile tuber | 5.22 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.92 | |
| Mother_Juven | Mother tuber of Juvenile | 8.60 |