Detail information of GWHGAAEX001694/evm.TU.scaffold_111.74


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|434392263|ref|YP_007127210.1|3.00E-11ATP-dependent Clp protease adapter protein clpS [Gloeocapsa sp. PCC 7428]
nrgi|743882347|ref|XP_010909131.1|1.36E-53PREDICTED: uncharacterized protein LOC105035307 isoform X1 [Elaeis guineensis]
trEMBLtr|Q5QLB9|Q5QLB9_ORYSJ2.00E-52Uncharacterized protein {ECO:0000313|EMBL:EAZ14050.1}

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000011124189202425874-
Transcript Sequence

Network for GWHGAAEX001694

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02617.16ClpS981603.10E-05
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0030163Biological Processprotein catabolic process

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms43.800
SRR2545915Juvenile tuber52.750
SRP108465SRR5643513five period of Gastrodia elata45.930
SRR5643514five period of Gastrodia elata55.440
SRR5643515five period of Gastrodia elata52.130
SRR5643524five period of Gastrodia elata50.920
SRR5643525five period of Gastrodia elata70.900
SRR5643528five period of Gastrodia elata55.460
SRR5643658five period of Gastrodia elata50.980
SRR5643659five period of Gastrodia elata77.840
SRR5643660five period of Gastrodia elata82.960
SRR5643661five period of Gastrodia elata91.790
SRR5643662five period of Gastrodia elata93.160
SRR5643663five period of Gastrodia elata86.340
SRR5643664five period of Gastrodia elata107.950
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_165.230
SRR6049655Rhizomagastrodiae_C368-T10_good_1101.140
SRR6049656Rhizomagastrodiae_C368-T07_good_161.180
SRR6049657Rhizomagastrodiae_C368-T07_good_165.170
SRR6049658Rhizomagastrodiae_C368-T04_good_181.260
SRR6049659Rhizomagastrodiae_C368-T04_good_184.930
SRR6049660Rhizomagastrodiae_C368-T01_good_166.540
SRR6049661Rhizomagastrodiae_C368-T04_good_176.120
SRR6049662Rhizomagastrodiae_C368-T01_good_154.850
SRR6049663Rhizomagastrodiae_C368-T01_good_170.150
SRR6049664Rhizomagastrodiae_C368-T10_good_159.060
SRR6049665Rhizomagastrodiae_C368-T10_good_159.060
SRP279888GastroGastrodia elata tuber 162.88
JuvenJuvenile tuber41.52
Mother_GastroMother tuber of Gastrodia elata 45.07
Mother_JuvenMother tuber of Juvenile 30.56