Detail information of GWHGAAEX001699/evm.TU.scaffold_111.82
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|300311428|ref|YP_003775520.1| | 3.00E-63 | S-adenosylmethionine:2-demethylmenaquinone methyltransferase [Herbaspirillum seropedicae SmR1] |
| nr | gi|743852031|ref|XP_010940290.1| | 6.84E-109 | PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Elaeis guineensis] |
| Swissprot | tr|Q9M8R9|RRAA1_ARATH | 1.00E-96 | Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 1 |
| trEMBL | tr|M0SN48|M0SN48_MUSAM | 5.00E-109 | 4-hydroxy-4-methyl-2-oxoglutarate aldolase {ECO:0000256|RuleBase:RU004338} |
| TAIR | AT3G02770 | 4.00E-96 | Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000111 | 2546727 | 2547326 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001699
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03737.14 | RraA-like | 8 | 161 | 2.40E-43 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0051252 | Biological Process | regulation of RNA metabolic process |
| GO:0008428 | Molecular Function | ribonuclease inhibitor activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 27.800 |
| SRR2545915 | Juvenile tuber | 41.480 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 143.750 |
| SRR5643514 | five period of Gastrodia elata | 101.630 | |
| SRR5643515 | five period of Gastrodia elata | 101.790 | |
| SRR5643524 | five period of Gastrodia elata | 118.070 | |
| SRR5643525 | five period of Gastrodia elata | 82.160 | |
| SRR5643528 | five period of Gastrodia elata | 69.940 | |
| SRR5643658 | five period of Gastrodia elata | 56.030 | |
| SRR5643659 | five period of Gastrodia elata | 163.080 | |
| SRR5643660 | five period of Gastrodia elata | 183.090 | |
| SRR5643661 | five period of Gastrodia elata | 201.450 | |
| SRR5643662 | five period of Gastrodia elata | 183.850 | |
| SRR5643663 | five period of Gastrodia elata | 147.010 | |
| SRR5643664 | five period of Gastrodia elata | 167.920 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 86.120 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 56.590 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 96.550 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 90.570 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 102.540 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 98.990 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 82.270 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 98.570 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 80.980 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 64.540 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 130.410 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 130.410 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 215.56 |
| Juven | Juvenile tuber | 109.21 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 43.90 | |
| Mother_Juven | Mother tuber of Juvenile | 47.26 |