Detail information of GWHGAAEX001700/evm.TU.scaffold_111.83
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|307595910|ref|YP_003902227.1| | 1.00E-12 | hypothetical protein Vdis_1803 [Vulcanisaeta distributa DSM 14429] |
| KOG | KOG2749 | 0 | mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 |
| nr | gi|743762630|ref|XP_010909089.1| | 0 | PREDICTED: protein CLP1 homolog [Elaeis guineensis] |
| Swissprot | tr|Q9SR06|CLP1_ARATH | 0 | Protein CLP1 homolog {ECO:0000255|HAMAP-Rule:MF_03035} |
| trEMBL | tr|M0U4C8|M0U4C8_MUSAM | 0 | Protein CLP1 homolog {ECO:0000256|HAMAP-Rule:MF_03035} |
| TAIR | AT3G04680 | 0 | CLP-similar protein 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000111 | 2556069 | 2565898 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001700
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF16573.4 | CLP1_N | 11 | 102 | 3.50E-31 |
| PF16575.4 | CLP1_P | 122 | 310 | 4.30E-69 |
| PF06807.13 | Clp1 | 315 | 426 | 1.10E-34 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14399 | CLP1, HERB | mRNA surveillance pathway | map03015 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0031124 | Biological Process | mRNA 3'-end processing |
| GO:0005849 | Cellular Component | mRNA cleavage factor complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 32.300 |
| SRR2545915 | Juvenile tuber | 28.520 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 31.080 |
| SRR5643514 | five period of Gastrodia elata | 31.760 | |
| SRR5643515 | five period of Gastrodia elata | 28.580 | |
| SRR5643524 | five period of Gastrodia elata | 30.030 | |
| SRR5643525 | five period of Gastrodia elata | 42.740 | |
| SRR5643528 | five period of Gastrodia elata | 50.060 | |
| SRR5643658 | five period of Gastrodia elata | 42.640 | |
| SRR5643659 | five period of Gastrodia elata | 28.970 | |
| SRR5643660 | five period of Gastrodia elata | 31.070 | |
| SRR5643661 | five period of Gastrodia elata | 29.620 | |
| SRR5643662 | five period of Gastrodia elata | 33.920 | |
| SRR5643663 | five period of Gastrodia elata | 29.160 | |
| SRR5643664 | five period of Gastrodia elata | 33.440 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 29.460 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 28.460 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 32.580 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 30.920 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 30.870 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 28.410 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 27.650 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 32.400 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 38.340 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 35.230 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 37.170 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 37.170 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 39.69 |
| Juven | Juvenile tuber | 27.84 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 38.52 | |
| Mother_Juven | Mother tuber of Juvenile | 31.30 |