Detail information of GWHGAAEX001703/evm.TU.scaffold_111.86
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|743852007|ref|XP_010940284.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: auxin response factor 12-like [Elaeis guineensis] |
| Swissprot | tr|Q258Y5|ARFL_ORYSI | 0 | Auxin response factor 12 |
| trEMBL | tr|V7BBY2|V7BBY2_PHAVU | 0 | Auxin response factor {ECO:0000256|RuleBase:RU004561} |
| TAIR | AT5G37020 | 0 | auxin response factor 8 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000111 | 2634982 | 2687495 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001703
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02362.20 | B3 | 129 | 230 | 5.50E-21 |
| PF06507.12 | Auxin_resp | 255 | 338 | 1.60E-33 |
| PF02309.15 | AUX_IAA | 521 | 797 | 2.80E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | B3-ARF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009725 | Biological Process | response to hormone |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005515 | Molecular Function | protein binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 16.360 |
| SRR2545915 | Juvenile tuber | 19.320 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 18.120 |
| SRR5643514 | five period of Gastrodia elata | 22.240 | |
| SRR5643515 | five period of Gastrodia elata | 20.680 | |
| SRR5643524 | five period of Gastrodia elata | 20.830 | |
| SRR5643525 | five period of Gastrodia elata | 36.830 | |
| SRR5643528 | five period of Gastrodia elata | 40.030 | |
| SRR5643658 | five period of Gastrodia elata | 40.300 | |
| SRR5643659 | five period of Gastrodia elata | 19.230 | |
| SRR5643660 | five period of Gastrodia elata | 19.770 | |
| SRR5643661 | five period of Gastrodia elata | 16.230 | |
| SRR5643662 | five period of Gastrodia elata | 14.000 | |
| SRR5643663 | five period of Gastrodia elata | 21.660 | |
| SRR5643664 | five period of Gastrodia elata | 16.230 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.800 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 17.200 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.640 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.900 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.850 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.080 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.390 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.230 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 20.830 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.980 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.380 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.380 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.26 |
| Juven | Juvenile tuber | 19.62 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.69 | |
| Mother_Juven | Mother tuber of Juvenile | 13.04 |