Gene detail

Database	Orthologs	E value	Annotation
COG	gi\|297526176\|ref\|YP_003668200.1\|	2.00E-14	RNA-binding protein [Staphylothermus hellenicus DSM 12710]
KOG	KOG3409	2.00E-83	Exosomal 3'-5' exoribonuclease complex, subunit ski4 (Csl4)
nr	gi\|672131799\|ref\|XP_008789464.1\|	2.92E-109	PREDICTED: exosome complex component CSL4 [Phoenix dactylifera]
trEMBL	tr\|M0RYW4\|M0RYW4_MUSAM	6.00E-109	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P11050_001}
TAIR	AT5G38890_1	2.00E-83	Unannotated protein

Scaffold	Start	End	Strand
GWHAAEX00000111	2829142	2848253	-

Transcript Sequence
>GWHTAAEX001711 GTTAATTTTCTCAGTACAGTTGTGGGAAAAAGAGATGGCCATCATGGCTGCTGGGGAAGAAGGTTTAGTAACTCCCGGTGAAATACTGGGAAATTCTTCTGACTTAATTGCCGGAAAAGGAGCGTATATTTCACCCAATGGCCGAAATATTCACGCCTCCCTAACCGGCCGCCGCGTTATATTTCCGCCTTCACCAGATTCCGCCGAGAAGAGATCGACCGTGAAAGTTGTTGGACACAAGCCCTGCGGCGCTGTTCCGGAGCCGGGATTTATTGTCTTTGCTCGCGTGACTAAGGTTATGGCCAGAATGGCGTCAGCTGATATAATGTGTGTTGAATCAAAGGCTGTTAAAGAAAAGTTTACTGGTATTATTAGGCAACAAGATGTCAGGACAACTGAAATTGATAAAGTTGATATGTACCAGTCTTTTCGGCCAGGTGATATTGTTAAAGCGATAGTACTGTCTCTGGGAGATGCAAGGGCTTATTACCTTTCCACTGCAAAGAATGAACTAGGAGTTGTTTCGGCTCAGAGTATAGCTGGTGCAACCATGGTACCGATCAGCTGGACCGAGATGCAGTGCCCGTCGACTGGTCAGATTGAGATGAGAAAAGTTGCACAAGTGGTTTAAACATTCTTCGATTTCCCTTCTCCTTGTTTCACCTGCTAGTATCTTGTGCTTGCAGGCAGCTGCTCAAATGGATCAGAAGGCATTTATACAATTGCTAATATAATTGTTATGCTGAATGAAATTTATTATCTTTTATTTGTATAACATCTGAGATTAGTGTACTGTAATCATCCCTTTTCTGTAACATTTTCCTCATGTCCATGTTATTATTGCCTTCATTATCTTCTTATCTTATTAT

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Module ID	Function Annotation

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14382.5	ECR1_N	11	48	2.00E-09
PF10447.8	EXOSC1	102	145	4.70E-12

Protein Sequence

Gene family	subfamily
--	--

KO	Enzyme	pathway	mapID
K07573	CSL4, EXOSC1	RNA degradation	map03018

GO term	Ontology	Name
GO:0003723	Molecular Function	RNA binding
GO:0000178	Cellular Component	exosome (RNase complex)

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	42.470
SRP064423	SRR2545915	Juvenile tuber	49.760
SRP108465	SRR5643513	five period of Gastrodia elata	54.150
	SRR5643514	five period of Gastrodia elata	64.140
	SRR5643515	five period of Gastrodia elata	53.160
	SRR5643524	five period of Gastrodia elata	59.410
	SRR5643525	five period of Gastrodia elata	68.820
	SRR5643528	five period of Gastrodia elata	62.370
	SRR5643658	five period of Gastrodia elata	66.910
	SRR5643659	five period of Gastrodia elata	47.520
	SRR5643660	five period of Gastrodia elata	45.130
	SRR5643661	five period of Gastrodia elata	42.890
	SRR5643662	five period of Gastrodia elata	49.790
	SRR5643663	five period of Gastrodia elata	54.270
	SRR5643664	five period of Gastrodia elata	52.290
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	39.370
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	45.670
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	39.460
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	36.070
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	30.060
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	28.960
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	35.030
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	32.590
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	32.310
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	34.210
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	46.670
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	46.670
SRP279888	Gastro	Gastrodia elata tuber	64.63
	Juven	Juvenile tuber	90.51
	Mother_Gastro	Mother tuber of Gastrodia elata	62.42
	Mother_Juven	Mother tuber of Juvenile	62.99