Detail information of GWHGAAEX001714/evm.TU.scaffold_111.100
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|307151117|ref|YP_003886501.1| | 4.00E-114 | phytoene synthase [Cyanothece sp. PCC 7822] |
| KOG | KOG1459 | 0 | Squalene synthetase |
| nr | gi|40557193|gb|AAR87868.1| | 0 | phytoene synthase [Oncidium hybrid cultivar] |
| Swissprot | tr|Q52QW5|PSY_ONCHC | 0 | Phytoene synthase, chloroplastic (Precursor) |
| trEMBL | tr|Q6RIC0|Q6RIC0_ONCHC | 0 | Phytoene synthase {ECO:0000313|EMBL:AAR87868.1} |
| TAIR | AT5G17230 | 0 | PHYTOENE SYNTHASE |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000111 | 2966937 | 2981935 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001714
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00494.18 | SQS_PSY | 104 | 359 | 2.80E-69 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02291 | crtB | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Carotenoid biosynthesis | map00906 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006696 | Biological Process | ergosterol biosynthetic process |
| GO:0009058 | Biological Process | biosynthetic process |
| GO:0016740 | Molecular Function | transferase activity |
| GO:0051996 | Molecular Function | squalene synthase activity |
| GO:0004310 | Molecular Function | farnesyl-diphosphate farnesyltransferase activity |
| GO:0016765 | Molecular Function | transferase activity, transferring alkyl or aryl (other than methyl) groups |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 19.930 |
| SRR2545915 | Juvenile tuber | 20.030 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 73.270 |
| SRR5643514 | five period of Gastrodia elata | 47.380 | |
| SRR5643515 | five period of Gastrodia elata | 36.700 | |
| SRR5643524 | five period of Gastrodia elata | 43.120 | |
| SRR5643525 | five period of Gastrodia elata | 18.020 | |
| SRR5643528 | five period of Gastrodia elata | 10.620 | |
| SRR5643658 | five period of Gastrodia elata | 16.360 | |
| SRR5643659 | five period of Gastrodia elata | 21.740 | |
| SRR5643660 | five period of Gastrodia elata | 19.380 | |
| SRR5643661 | five period of Gastrodia elata | 20.340 | |
| SRR5643662 | five period of Gastrodia elata | 35.040 | |
| SRR5643663 | five period of Gastrodia elata | 37.440 | |
| SRR5643664 | five period of Gastrodia elata | 44.430 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 41.430 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 51.650 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 43.580 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 51.800 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 50.140 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 52.210 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 45.220 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 49.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 25.690 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 23.660 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 69.680 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 69.680 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 51.56 |
| Juven | Juvenile tuber | 53.93 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 29.99 | |
| Mother_Juven | Mother tuber of Juvenile | 20.16 |