Gene detail

Detail information of GWHGAAEX001716/evm.TU.scaffold_111.103

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743832313\|ref\|XP_010934942.1\|	5.05E-130	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105054971 [Elaeis guineensis]
trEMBL	tr\|A0A067HEC1\|A0A067HEC1_CITSI	9.00E-106	Uncharacterized protein {ECO:0000313\|EMBL:KDO86297.1}
TAIR	AT4G01300	4.00E-60	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000111	2996719	3020210	-

Transcript Sequence
>GWHTAAEX001716 GAAGTTTCTGATTTTATAACAGAGAAAAGAGTTTTATGCGGGCGGTCTTTGGCTTTCGTCATTTTCTTCATCCCGTCCATTCTTTCCTCCATGTTTTTTATTTCTCACTTCTTCAATCTTCTTGTACCTCTTCCTCTTCCTCTTCCTCTCTCTCCTCGAATCGCAGGCAAGAACAGAGGAATCTATTTATCCTTCGAATCCTTTTATCAGGAGGCGAAGTCCGTCGATTTATCTCAGCCTGGAGGTCTTCCGAACGCCTAAACCCCTCTTCACTCCCGCGATATACCTTGGCCGCGATCAATTTCCAAGACTCGATTTCTTCGCTTCTATTTCTCTCATCTACGCTGCTTTCGGGATTTATCGAGTTCTGTACATATTAATATCCTTGCCGTTGAAACCAGTTCCGAGCTTTGTCTTCTGTTAAACGCTGTTTTGGGGCAGTGGTCGTTGAATTTTTTTCTATATAGAGCGATCCCTTGCTATTGTAGTCGGTTTTTATAGTTTTGAGTTGTTCAAATGAGAAGCTAGGGTTTGAAGATTTTGGTTTGCTTCTCGCCGGCAAGCTGTAATATAGGAGTTTGAGAAGTTCAGGATTCGGGGATGAGTTCGGAGAATGAGGATCAATTGTCGCTGCAATTCCCTGTCGGAGGCAGCTCTCATGTGTCGGATCAAAAGAAGCCTAGAATTAAGTATACGAGAGAATTTGTTCTGTCTTTGAGTGAATTGGATGTTTGCAAGAAGCTACCCAGTGGGTTGGATAGATCATTCTTGAGCGATCTTGAAGCTACCAACACTGCATTTGAGAAGCAAAGAAGTGCCGGGAATTTATCTTTGCAGGGTTCAAGACGGGGAGAATATGGCTCTCAATTGCTGAATAGATCGGAAAATTCAAATAGCTATACAAAAGTTGGTGCAGGGAGGTGGGATACCCGGTCATCCGGGTCAAGTGAGAAAGAGGGGGATTTGCACTCTGACCGTGAATCTTTTACCCAAGATTCTGGAAGAAGATTTGGAAATCAAAATCGGCGAACTTGGCAACCTCCAGAGCATGACGGACTTTTGGGAAGTGGTGCGTTGGCAAGACCTCCAGGTTTTACCGGAGCATCATCCTCGAAGGTTCGAGGTAATGGCCCATATCAGCTTAATAGGAGTACCGAGCCTTATCAGCCTCCACGAGCTTATAAGGCTCAACCTTATTCACGCAAAGATGGCACTGATTTGTGCAATGATGAAACTTTTGGTTCAAGTGAATGTTCAAATGAGGACAGAGTCAAAGAAGAGAGAAAGCGGAGAGAGTCCTTTGAGTTAATGAGGAAAGAGCAGCAGAAAGCACTGCAAGAGAGAAATGACAAAGATATTCATAAAGGAAACTTTGGCGTGGATATAATGGCTTTATTGGGAAATTCTGATGCTGATAAAACCACAAAGAATTTAACTAAGCCAGATGAATCTTCTGCCGACTCCGTTTCCCCAAAAGATTTTTCTAAGTCTTCTCTTATCCATGGCCCTGCTGCCAGACCACTAGTGCCACCCGGCTTTGCAAGCACAGTAATGGAGAAAGGCAATCAGTCAAACAAGCCGAAGAGCACTGCTTTACATTCCACAGAAAGCTCATCTGCACCTGCTGATGTTGGCTTTGGCAACCTTTCTCTTAACACGACCACTGGTTTGCAGGAGGAAGTTCATGAGGTTTTGGAAGAGGGCCAAAAGGAGGCAGTGACTGATAGATTGGATGCTGCATCTTCTTCTGCTTCTGCTTCTATTTTTGACAAGCTTTTTGAGAGTGCATTGTTGGCAAATAATTCCATCGTTTTGGCAAGCGATGTTCAGAATTGTTATGCTAGTGACGAGGCAGATGAAAAAGCATGGACTTCTCATCAGCCATCGGAATCCTCCAAATTCGCTCATCTTTTCCACGAAGAGTTCGAAGATAACAACATATCAATGCAGGAAAAGTCCTCTAGAGATTTACTTTCCTTGCTTGTCTATAACGACGGTGCTGTCCCCCATAAAACCCGCATTACTTCAAATGCAGTGCTCACGTGCGAGGACCTGGAGCAGTCCATATTGGCTGAAGCCGAAGGCGTGGATGGGCATTCGGTCGTGCAGCCAGCAGTAGCACCGCCCTCCGAAGCCCAAACATACGTAGTGGACAACCTTGCTTCCCACCATCTGCTTTCCCTTCTGCAGAGAGGAGCAGAAGCAGAGCAGAGCCCGGGAAAGCGCCTCACTTTGGAGACTCTGTTTGGGGCAGCATTCATGAACGAGCTGCACTCCATGGAAGCCCCAGTCTCTAAAAAGGATTTCCATCTCCCCGAAAAAGACAGCTTGGTGCCCCCGAATGACTCCCTCAACGCCATTCTCGGAGTCGGGGGGGAGTTTTATGGCGAGCCTCGCACTGCAGTGCCCATCCCCGATGATGATTTTCGTTTTCGCAATCATCAACTCAACGCATTCTCTCATCGTCAGCAGCAGCAGCAGCAGGATCTGCTGCCAATGATGGATCAGGTTCCCATCTTTCTGCATGGCGTGCTCCCCCCGCAGCAGCTTCGGCAGCCCGACTTTGGGGTCAGCGATGGGAGGCAAACCCAGGAGGCCTTTGAAAGGCAGCAGCAGCAGCAGCAGCAGATGATGGAATTGGAGATGAGAGCTGCTGCGAACGGGAAGCAATTCCACCATCCCTACCATTTTCCTGGCGGAGTGCATGCGCCTGCTGAGTTGGACATGAACTTACGCTACAGGTAACATGCATACATACATACATACATATAATTGTATGTATGTATGAATGAATGTGGGCTCATTTAGACCTTGCGGGCGGGTGGGTGAGTTCAAAAATGGCTGCTTTTTGTATTAAAGAAGGCAAGAAACATGGGCAGTGCTTTTCAGCCTAGTAAATATTTACGTGAAGGGGAGAAGAAAGATTGTGATGTAGCTGTGTATGGCATCTCTCACACCCAACTGATTTGGCTTTTGTTTGTCACTTTTGCCCCTCTTTTGCATGCTATAATGTTTGATATATATAATAGTTTAAATAATATGTATGTAAATCATATAAAATGATGTATGCATCTATTAGCCAATAATCAGTGTTTTTTATTTTAAATAAAAATGAATTAATTTTTGTGATTTTTCTGAA

Network for GWHGAAEX001716

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	85.340
SRP064423	SRR2545915	Juvenile tuber	70.470
SRP108465	SRR5643513	five period of Gastrodia elata	47.960
	SRR5643514	five period of Gastrodia elata	48.890
	SRR5643515	five period of Gastrodia elata	40.610
	SRR5643524	five period of Gastrodia elata	45.110
	SRR5643525	five period of Gastrodia elata	75.070
	SRR5643528	five period of Gastrodia elata	70.900
	SRR5643658	five period of Gastrodia elata	70.870
	SRR5643659	five period of Gastrodia elata	45.840
	SRR5643660	five period of Gastrodia elata	54.450
	SRR5643661	five period of Gastrodia elata	51.350
	SRR5643662	five period of Gastrodia elata	54.960
	SRR5643663	five period of Gastrodia elata	50.060
	SRR5643664	five period of Gastrodia elata	57.100
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	47.500
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	63.040
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	47.660
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	46.820
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	46.060
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	51.550
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	42.120
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	42.280
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	41.980
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	40.930
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	54.290
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	54.290
SRP279888	Gastro	Gastrodia elata tuber	54.12
	Juven	Juvenile tuber	55.25
	Mother_Gastro	Mother tuber of Gastrodia elata	58.00
	Mother_Juven	Mother tuber of Juvenile	68.29