Gene detail

Detail information of GWHGAAEX001721/evm.TU.scaffold_111.107

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2812	9.00E-83	Uncharacterized conserved protein
nr	gi\|695058619\|ref\|XP_009417628.1\|	4.67E-127	PREDICTED: NF-kappa-B-activating protein [Musa acuminata subsp. malaccensis]
trEMBL	tr\|M0U0J2\|M0U0J2_MUSAM	2.00E-127	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P15340_001}
TAIR	AT4G02720	9.00E-83	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000111	3129888	3131845	-

Transcript Sequence
>GWHTAAEX001721 TCTCTATATTTGATTATCAAAACTTAATTAACATTAAGATTGAACGGTTTTAATTATTAGTTATTATAAGTAACCCATAAGACCGAACGTGAATTGAGAGCAGAGATGTCTAGGGTTTCTATCCCGCCTGCGCCCAATGTTAGGGACGACCGCCGTGAGCGACGGAGCTCTATATCCAGAAGTCCATCTCGCCTATCGCGAAGCCCTGCTTTTAATCGCTTTCACCGTGACCGTCGGTCATGGAGGATGGATGGCGACAATTCTCACTCCGATGAGGATCTCAGAGGCTTAAGCTACTTTGAGTATCGTCGGATCAAACGACAGCGTCTCAGGAAAAGGCTTGCAAATTGCATATGGAGGGTCACGCCTAGCCCTCCAGAGAGCGATAGGGACCTGTCGGAGATACCGTTGGAAGGCCTTGAAGTCAGCCTCGATTCTCCTTTAGAGAAGAATAAGAAGAAGAGGGACGAGTCTGTTTCGGATGGTTCTGATGGCAACAGCTATTCTTCTGACAGATCTGATTCTGCCTCTGAGAGTCCTAGGCCCGACAGGAGGAGTTTGAGAAGACGAAGGAGATCTCTGAAGCGAAGGTACTCAGATTCAAGTGAGGCTAGGAGCCAAACCGATAGCGGTTCCTCGTCATATGATTACGATTCAGGGAGTTATTCTGATTCCTCGAGTGATTTGGATGATCAACGGAGACAAAATAAGAGGAATTTTGGGAAGCAGAGAGGGAGCATGAAGGGAAATGTGCGTTCCAGAAGCAAGAGGAGGAGATCGTACAGAAATAATAAGAAAAAGAAAAGCAGGGATGTCACTTCGGATTACAGTGATTGTTCTGATTCTGAGTCCAGTCCTCGAGCCAGAAAGAGGAGAGCCTCAAAGAAGAAAAGCAAGCAGCCCAGATTGGAGTACTCGTCTGAATCAGAAGCTGATACTGGAGCCGTTGACGCTAGGAAACCTGAGATTGATCCTGAAGCACTAAAATTTAAGGAGATGATTGAATTTCAGAAGAAACAGGTGTTGGATAGTGAGCCACCTGTAGGTCCTATGCCGCTTCCACGTGCAGAAGGCCACATAAGTTATGGCGGTGCATTGAGGCCAGGAGAAGGAGATGCCATAGCCCAATATGTACAGCAAGGAAAGCGTATTCCGAGGAGAGGAGAGGTCGGTCTTTCTGCTGAGGAGATTCAGAAATTTGAGAACTTAGGCTATGTGATGAGTGGAAGCAGGCACCAGAGGATGAATGCTATCCGTATAAGGAAAGAAAACCAGGTTTATAGTGCTGAGGATAAGAGGGCTTTGGCTATGTTCAATTATGAGGAGAAGGCCAAACGGGAGCACAAGGTCATGGCTGACTTGCAAAGGTTGGTTCAACGGCATATTGGACAGGATGTTGGTCCCACACATGATCCTTTTGCGCTCAAGGCGTCAGAGGGTGATGATACTTGAACTTATTTCCTGGTTTTTACTTTTCCATGATAGTAAGTGTGCAACTTCTTAATTTCATAATCTATAAAGCGTGCTACTGTATAACTGGAGAAACAAATCTTTTCTTATCAAATTGGATATCAGAAGAACAAATTATTTCTGAACAAATTATTGGCTAAATTGTATGCAGGTTTGTGTCATTTCACTGATTATTTGCTCAACATCCTTGTTAAATTGGAATGCCAAAAGACTGATGATATGCTGTTGAATTAGATTTTGCATTTCATAGAGTTTAGCGTATTTGCAATGTTAAATTGTAAACAGTATGTACCATTTTTTGTATATTTGACTGAAATTTTTCAAAAATGTACGTGAAGCATTTATTATAGCAATCTTAAGTTCATATAGATATTTTCATTCTGCTCCATTTTTACAACATTATGCCTGAACTGTTTAATTGCAAAGTATTATGTGAAAGCATGATCTTTAATACCATATATAACAACATTACTAAGCTTTAGTCCCAC

Network for GWHGAAEX001721

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06047.10	SynMuv_product	326	424	3.30E-49

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003682	Molecular Function	chromatin binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	51.660
SRP064423	SRR2545915	Juvenile tuber	54.440
SRP108465	SRR5643513	five period of Gastrodia elata	34.410
	SRR5643514	five period of Gastrodia elata	32.780
	SRR5643515	five period of Gastrodia elata	34.790
	SRR5643524	five period of Gastrodia elata	33.030
	SRR5643525	five period of Gastrodia elata	33.550
	SRR5643528	five period of Gastrodia elata	33.610
	SRR5643658	five period of Gastrodia elata	36.320
	SRR5643659	five period of Gastrodia elata	39.570
	SRR5643660	five period of Gastrodia elata	41.530
	SRR5643661	five period of Gastrodia elata	37.450
	SRR5643662	five period of Gastrodia elata	41.910
	SRR5643663	five period of Gastrodia elata	33.060
	SRR5643664	five period of Gastrodia elata	32.080
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	37.210
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	25.080
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	38.210
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	44.830
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	44.540
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	59.600
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	44.560
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	49.760
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	34.260
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	39.790
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	33.800
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	33.800
SRP279888	Gastro	Gastrodia elata tuber	37.79
	Juven	Juvenile tuber	39.98
	Mother_Gastro	Mother tuber of Gastrodia elata	33.62
	Mother_Juven	Mother tuber of Juvenile	30.46