Gene detail

Detail information of GWHGAAEX001722/evm.TU.scaffold_111.108

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1913	0	Regucalcin gene promoter region-related protein (RGPR)
nr	gi\|672141898\|ref\|XP_008794795.1\|	0	PREDICTED: uncharacterized protein LOC103710705 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9FGK8\|SC16B_ARATH	0	Protein transport protein SEC16B homolog {ECO:0000305}
trEMBL	tr\|F6GV55\|F6GV55_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43837.1}
trEMBL	tr\|F6GV55\|F6GV55_VITVI	4.00E-19	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43837.1}
TAIR	AT5G47490	0	RGPR-related

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000111	3132646	3146118	+

Transcript Sequence
>GWHTAAEX001722 ATTGAATGTTGCTAATTACACCAGAATTTTTAAGATTTGAGCATGTGTATAGGACACGGATGAGGGAGGAAGAAGCGCTGAATCTGGGATGGGAACGAAGCTTGGATTCTGGAGATTCGAAAGCGTCGATAGGATGCTGAAATCGCTAGTTTTTCCATGTCTATAATGCGATTCTGCACTCAGTTTTCCGCTTCGCAGCCGTCCGCAGCTGAACGGGATCTTATAGCGCGTGATTCGGTTATCTGGTTTCCGTTATCGGCTAGGGTTATTGGGGGTCAATCGATTATTGAGTTTTCAGATATTCCTTGAAAGCATCCCTTCGGGTTTTTGTGATCCCATGGCATCTTCTTCTCCTCAGAAGGACCGGATGGATGAGGAGTTATATGATAGGCTAGTTGAAGATGATTATAGAGCTGCTCAACCTAGCTCAGAGCATGAAGAAATGGTAAGGGTGCTGTCAAGTTTTAATCTAGGGGAGGTGGAGTATTTTGGGTCTGCATCTGAGGTGAATGGACTGAAGGATAATGATACTATTGTGAATACTTTTGAGGCTTCCGAGAACAATGCTTCTGCTGAAGAGAAATCTGAAGTTTCGGTTGAAGGGGCAGCTGGCGGCGCCAAGGGGACAAGTGTTAAGGAAATTGAGTGGAGTGCCTTTAGTGTTGATTCTCAGCAGTTAGGACAAGGTGAGTTTGAATCTGATTTGTTCATGGGGAATGGATATGGTATGTTGGTTGAGCCGGATGATTTCCCCCAGTCAAAATCAACTGTAATAGAGAACACGGCTGAATCTCTAAGCTCACAAATGGGTTCCTTTGAGCAACATAATGCTCAGGTTTGTAGTTCTGTTGGTGAAAATAGTACAGCAGATTTAACCAAAATGCAGAACTGGGAAAATCTTTATCCTGGTTGGAAGTATGACTCCATTGCTGGGAAATGGCATCAAATAGATGGATATAATGCCACCACAGATACCCACGATACTTTCAATACAGCTAGTGGAAGTACACATGAAAAAAGCCAAGCTAAAGTACTGAGTACATTCAATGGGTCATTGTTGGAGGTAGCAGATGCTGATGAGAATCTTCAGCAGACTAATCACCCGGTCTTAGAAACGATACTCGAGGAGAATAATATCGCTAACGACAAAAGTCAAGTTTCTCAAGAAAGCGTAAATTACCCTCAGACTAATCACTCGGTTTTAGAAACAATACCCGGGGAGATTAATACCGCCAATGACAAAATTCAAGTTTCTCAAGAAAATGCAAATTATCCTCTTAATATGGTGTTTTATCCTCAATATCCAGAATGGTATTATGACACAATCACACAAATGTGGTGCACCCTTGAGTCATATCAACATACTCTTCATCACTCTTCAAATGCAACTCAAGGCACTTTGGCTGACAATATGAATGCTTTAACTAAGGATCAGAATACCTTTGAAGGCTCACTATTAGATATATCAGATCCTGTGAATATTCAGCATAGTCATTCAGTTTTTGAAACCATTTCTGCGGATAGAAGTGGTGTTTCAAACAATAAACAGGTTTCTCAAGATAGCATAGAGTACCCACCTAATATGGTATTTGATCCTCAGTACCCAGAATGGTATTACGACAACATCACACAAATGTGGTATACTCTTGAGTCATACAATCACAACCTTCACGATCCTTCAAACACAACTCAAGATATTTTGACTAACAATGCAAATTCTTTAGCCGAGTTGGATGTAGACCACCATGCACAGTCAGGACAATACACATTGATGGAACAAAGCAGCATAAAAAGTTATCGGAATGCATCTGCAAGTGGTCAAGAAGGTCATTGGAATGCATCTAGCAGTGGATGTGGTCCTCCAAGCATGTTGCAGGAACAAACTAATAAAGAAAGTAATTCTAAAGTGTTTGTTAATGGTTATGATCAGCAGAATGCACATCAACCAGAATTTCACATTAAAAGTGGAAGTGCAGCACGTGATTCAAACAATCACATGGCTGGGAGATTTTATGGCTTGCCAGAGTATACTGGAAACCATCCAGATAATAACCAATTAGATTCTATCAATTTAGAACCTACTGTGAAGCATAATTATAGTGAAATCAACATGGCTGCTGCTCAGAGTTATGCTATTTTAGAAAGCATGCACAATGTTAATCAGCCTAACATCGAACAGAGCCTTCCTGCACATATATCTTACAATAATTTTGACACGGAAAGCTCGATTCACTATTCTCAACAACCATTTCAGGGTGCAAATCTATCCTATTCACAGTTTTCTTATACACCTAAAGAAGGTAGATCAACAGCTGGGCGTCCTCCTCATACATTGGTTACATTTGGATTTGGTGGGAAAATTCTAGTTATGAATGATGCCAGCCTTTCAAGCTCAAGTTTTGCCTCTGGAAGTTTGGGAACTGTAGGAGGTGTTGTATTGATTCATAGCTTAGCAGATGTTGTGATGACTAAAGTAGACATTTTGAACACTCCTACTTCCAGTGGCTTTAGTTACTTTCATTCTTTATGCCGGGAAGCATTTCCCGGCCCCCTTATCGGTGGGAATGCTGCATCTAAAGATATAAATAAATGGATAAATGACAAGATAATGGCTAGCGAGTCTTCAAACATGGAATTTCAAAATGGTTCACTCATGAGGTTACTTTTTTCTTTATTGAAAATACTGTGTCAGTATTATGGAAAACTTCGGTCTCCATACGGCCTAGAATCCTCACATAAGGGAAGTGATGTTCCCGAGTCTGCAGTTTCAAAATTGTTTGCATCTGCCAAAATGACGGATGCTCCTTTTAATGGATTTAGTTCCTCCATGCAATGCATGAAAAACCTGCCTTCTGAAGGGAATATCAGGAATACTGCCACTGAGGTACAAAATCTCTTGGTTTCCGGAAGAAGAAAAGAGGCACTCGAACGTGCACAAGAAGGTCAATTGTGGGGCACCGCTATTGTTCTTGCTGCACAACTGGGTGAGCAGTTCTATGCTGACACCGTGAAGCAAATGGCACTCCGACAGTTTGTACGTGGTTCGCCATTAAGAACATTACACCTTCTTATTGCTGGGAGACCTGCGGATGTGTTTTCTGGAGATAGTTCTTCCATTGGCTCACCTGGTGTTCCTAATGGATTGTACCAGTCTTCTGAGATTCTGCCGAAGAGCATGTTAGATGAGTGGCAAGAGAATCTGGCAATAATTACATCAAATAGAACAAATGATGATGAACTTGTCATTATTCACCTTGGAGATTGTTTGTGGAAGGAAAGAGAAGAGGTAGCTGCTGCGCACATCTGCTACTTGCTTGCAGAAGCAAACTTCGAGCCATACTCAAGCAGTTCAAGGCTTTGTCTTATTGGCGCAGACCACTGTAAAAATCCTCGTACATTTGCTTGTCCTGATTCCATTCAGAGAACTGAAGTATATGAATATTCAAAGGTCATCGGAAACTCACAGTTCGTCTTATTGCCTTTTCAACCTTACAAGCTCGTGTATGCTTACATGCTGGCTGAAATGGGGAAAATGTCTGATTCATTAAGGTATTGCCAAGCTTCCCTGAAGATACTGAAGAATTCTGGGCGTTCTCCAGAGGTAGAATTATTGAGGGCATTGTTCTCTTCTTTGGAGGAGAGACTAAGAGCTCATCAGCAGGTTGGCTATAGCGTGAATTTGGCCCCAGCCAAACTCGTGGGCAGGTTGTTCAGCTCAATCGACCGTTCGATCCACCGCATGATTGGGGTCCCGCCTCTTCCTCCTTCGCCACGGAACGCCGGGGATGGTGGAGATGGTAATGCCTCCTTTGTTCAGCAAAATTTGTCGACCAGCCAATCGGCAGCCGCCATCTCATCTTTGATGGCGGATTCGTCATCAACAGAGGCGATGGGCAACTGGGTGGCTGGTGGCGGCGGCTGGAAGACCGCCACACCCAGCAGAAGCATTTCTGAGCCGGATTTCGGACGAAGACCAAAGCGGAATTCGTCGAAGGACGGCGACGGCGGCCCGTCTGCTCCTTTGGGCGGGCCATCGCGCTTCGGACGCTTTGGCTCCCAGCTTTTCCAGAAAACCATTGGTTTGGTGTCGTGGTCCCGACATGATCGACAGGCAAAATTGGGAGAGAGCAACAAATTCTATTACAACGAGAAACTCAAGAGATGGGTGGAGGAAGGCGCCGAGCTTCCTGCCACCGAAGCTGCTCTTCCGCCACCGCCGCCGATGGTTGCGCCGAAGAGCCACAGCAAAGAAACGAAGGCCGATTCTCCGCCTGAATTAACCTTTGGCCGGAACCAGTTCTTGGCGCGCGACAACAGACTCGGAGTTCGGTCAAGATATGTCGACACCTTCAACAAGGGCGGTGGATCTTTCGCGGGAGCTTTCCGTCCGCCCCCTGTTCCGCCGGCGAAGCCTTTCTCCGGCGCCGGATTCTTCGTCCCCTCCGCCGACGTGCCTTCCTCTTCTTCGCCGGCCAATGGCGGCGGCGTTTTATTTGCTGGAGCTTATGAATTGAGCGGTGGCGGGCCGACGGTGGACGATGATCTGCAGGAGGTTGAGCTCTGATGAAAAAGCGTGGGGACAAAGTTTGATTTTCTGTTATATTTTTGTTTTGGGGGAAAGAAAACGGAATTAGTCTTGCTTTTGTACATAATATTTTTTGTTGATTACATTTGTAATTCAATGTTCTAGCATAGAAATTATGGGGACGGAAATTTGTGTATTATTTATTTATTGTTTTATAGCATTAGAAGGTTCTTTTTAGAATAAGTGTAAAATGTTTGTTTTTTTGCCCAATTTATTGAAGAGAAGTATCGTGAAGAAATATTTCATTCTGTTATAAATTATTTTCGCCTCTTTCAATGAGGATATGTAATTTTATTTGTTGATTTATTTATAATTCAATGTTTAATATAGAATATATGAGGAAATAGTGCTCAGATTTTGAATTTTGATTATTGTTGATCCTGCGGTTCTGAATTTGCCGATCATTTACACTAATGAAAGACATTTTATTTCAATTATTTCTGTATGTGGCATTCTGATTAATACTTATA

Network for GWHGAAEX001722

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12932.6	Sec16	664	788	1.00E-17
PF12931.6	Sec16_C	850	1136	4.40E-55

Protein Sequence

>GWHPAAEX001722
MASSSPQKDRMDEELYDRLVEDDYRAAQPSSEHEEMVRVLSSFNLGEVEYFGSASEVNGLKDNDTIVNTFEASENNASAEEKSEVSVEGAAGGAKGTSVKEIEWSAFSVDSQQLGQGEFESDLFMGNGYGMLVEPDDFPQSKSTVIENTAESLSSQMGSFEQHNAQVCSSVGENSTADLTKMQNWENLYPGWKYDSIAGKWHQIDGYNATTDTHDTFNTASGSTHEKSQAKVLSTFNGSLLEVADADENLQQTNHPVLETILEENNIANDKSQVSQESVNYPQTNHSVLETIPGEINTANDKIQVSQENANYPLNMVFYPQYPEWYYDTITQMWCTLESYQHTLHHSSNATQGTLADNMNALTKDQNTFEGSLLDISDPVNIQHSHSVFETISADRSGVSNNKQVSQDSIEYPPNMVFDPQYPEWYYDNITQMWYTLESYNHNLHDPSNTTQDILTNNANSLAELDVDHHAQSGQYTLMEQSSIKSYRNASASGQEGHWNASSSGCGPPSMLQEQTNKESNSKVFVNGYDQQNAHQPEFHIKSGSAARDSNNHMAGRFYGLPEYTGNHPDNNQLDSINLEPTVKHNYSEINMAAAQSYAILESMHNVNQPNIEQSLPAHISYNNFDTESSIHYSQQPFQGANLSYSQFSYTPKEGRSTAGRPPHTLVTFGFGGKILVMNDASLSSSSFASGSLGTVGGVVLIHSLADVVMTKVDILNTPTSSGFSYFHSLCREAFPGPLIGGNAASKDINKWINDKIMASESSNMEFQNGSLMRLLFSLLKILCQYYGKLRSPYGLESSHKGSDVPESAVSKLFASAKMTDAPFNGFSSSMQCMKNLPSEGNIRNTATEVQNLLVSGRRKEALERAQEGQLWGTAIVLAAQLGEQFYADTVKQMALRQFVRGSPLRTLHLLIAGRPADVFSGDSSSIGSPGVPNGLYQSSEILPKSMLDEWQENLAIITSNRTNDDELVIIHLGDCLWKEREEVAAAHICYLLAEANFEPYSSSSRLCLIGADHCKNPRTFACPDSIQRTEVYEYSKVIGNSQFVLLPFQPYKLVYAYMLAEMGKMSDSLRYCQASLKILKNSGRSPEVELLRALFSSLEERLRAHQQVGYSVNLAPAKLVGRLFSSIDRSIHRMIGVPPLPPSPRNAGDGGDGNASFVQQNLSTSQSAAAISSLMADSSSTEAMGNWVAGGGGWKTATPSRSISEPDFGRRPKRNSSKDGDGGPSAPLGGPSRFGRFGSQLFQKTIGLVSWSRHDRQAKLGESNKFYYNEKLKRWVEEGAELPATEAALPPPPPMVAPKSHSKETKADSPPELTFGRNQFLARDNRLGVRSRYVDTFNKGGGSFAGAFRPPPVPPAKPFSGAGFFVPSADVPSSSSPANGGGVLFAGAYELSGGGPTVDDDLQEVEL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0048208	Biological Process	COPII vesicle coating

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	30.270
SRP064423	SRR2545915	Juvenile tuber	21.620
SRP108465	SRR5643513	five period of Gastrodia elata	23.380
	SRR5643514	five period of Gastrodia elata	23.900
	SRR5643515	five period of Gastrodia elata	26.720
	SRR5643524	five period of Gastrodia elata	24.830
	SRR5643525	five period of Gastrodia elata	31.990
	SRR5643528	five period of Gastrodia elata	27.370
	SRR5643658	five period of Gastrodia elata	33.580
	SRR5643659	five period of Gastrodia elata	28.710
	SRR5643660	five period of Gastrodia elata	28.860
	SRR5643661	five period of Gastrodia elata	27.350
	SRR5643662	five period of Gastrodia elata	33.720
	SRR5643663	five period of Gastrodia elata	31.370
	SRR5643664	five period of Gastrodia elata	36.330
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	23.860
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	19.300
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	24.560
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	23.800
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	24.200
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	26.960
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	25.550
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	26.360
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	24.860
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	24.380
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	24.730
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	24.730
SRP279888	Gastro	Gastrodia elata tuber	30.85
	Juven	Juvenile tuber	25.57
	Mother_Gastro	Mother tuber of Gastrodia elata	34.77
	Mother_Juven	Mother tuber of Juvenile	35.06