Gene detail

Detail information of GWHGAAEX001724/evm.TU.scaffold_111.111

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0796	6.00E-133	Spliceosome subunit
nr	gi\|743778175\|ref\|XP_010919542.1\|	8.81E-166	PREDICTED: luc7-like protein 3 [Elaeis guineensis]
trEMBL	tr\|S8D1R3\|S8D1R3_9LAMI	3.00E-146	Salt tolerance protein 3 {ECO:0000313\|EMBL:EPS71281.1} (Fragment)
TAIR	AT5G51410	6.00E-133	LUC7 N_terminus domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000111	3228634	3244496	+

Transcript Sequence
>GWHTAAEX001724 GGAAAATAAAAGAAAAAAGATTTTAAGGATTTTTCGCATGGCTAAAAATTGGAAAAAATAGAAAAAATATATCGAAGAAACCGTGGAAATTACTGAATGCGGTGATCGTGCGCTACCAGAGTATCTCGATCTCTCCGAGTTATTTTGTATCACCGTTCACCAGCAGTAACCCTAGTAAGGCGCTAGCCATAATTGCAATCGGGGTGATTTTACTTCAATTCGAAATCCCCGACGGCCTCCATGGACGCCCAAAGAGCTCTTCTCGACGAGCTTATGGGAGCAGCTCGTAATCTGACCGAAGAAGAGAAGAAAGGCTATCGGGAAATACATTGGGATGATAGGGAGGTATGCGGGCCATTTATGGTGCGTTTCTGCCCTCACGATCTCTTTGTCAATACCAAGAGCGATCTCGGACCGTGCCCCAAGATCCACGATCTGAAGCTTAAGGAGAGTTTTGAAAATTCTCCTAGACATGATGCATATGTTCCCAGATTTGAAAGTGAGCTTGCACATTATTGCGAGAGACTGGCTATGGATTTGGACAGAAAAGTAAGACGTGGGCAGGAACGGCTGGCTCAAGATGCCGATCTTCCAATAACGGGTCCAGTGTCATCTGAGAGGTCTGAACAGTTGTCTGTGCTCGAAGAAAAAATTAACAAGTTACTGGAACAAATAGAGACTCTTGGAGAAGCCGGCAAGGTCGATGAAGCGGAAGCCCTCATGAGGAAGGTGGATATTTTGAATGCTGAGAAAACGGTTCTTTCACAAAGTGACAAACTGGTACTTACTCAAGAGAAGAAGATGGCTCTCTGTGAAATATGCGGTTCTTTCCTTGTGGCAAACGATGCCGCTGAGAGGGTCCAGTCTCATGTAAGCGGCAAGCAGCACATTGGGTATGGAATGGTGCGGGATTTCATTAGTGAGCACAAGGCATCTGTGGAAAAGAAAAGACAAGAGGAAAAGGTTGCCAGAGAAAAGGAAGACGAAGAAAGGAAAAAACATAGGGAGAGGGAAAGTGAGCAACGAGGCAGAGGCAATGAGACAAGCGGCAGGGAGCGAGATCGTTACCGCGAGCGAAGTTATGATCGGGAGAGATTTCAGGGACGGAATGAAAGGGCCGCAATTAGCATGGACGGCAGCAGAGGAGCGGATTGGAATCGTGCTCCTCTGCACAGGAATGGGAGAGACTGGGATAGGGAGCGGCTTCGAAGGAATGGGGAAACACTGAGAGATAGGGTCCATGGAAGGAGTAGGTCCCGCTCTCCTGTCAAGCGTGGCTACCGGAAATGATTTCGGTCCTCCTTACTCGATACAAATGTATGTAGGAAGTCTGTTGATCTCTCAGGTTGCGAAGAGCTTTGCTGATAACTTTTTTTCTTTTAGAGGAGATGAAACAGAGAAGCTCTCTATTCATTAGGCTACTTTCTTCTGATCTTAATTAAGATCATTTGCTGGATGATGGGCCACTAACAAAGCTTAAACTACTGGAAGATTCTAGAAATCCCTTATATTTGAGGTGCGCCAGAGCAAATCTTATCTATCCACAGATTAAACTGTTGAAGGTAGGCATACTATTCTCTCTTCAAGATTTTTTGCCAAAATAGTATGATAATGTTCCGATTTAGGCTGCATTTGGGACAGTTTTCTAGCTGTTGTGCTTTATCTAAACCCTTGGTTTGATTTCTGTTTGTTTTTTCGGGAAGCAATCCCTCAAAAAGCAAATTTGAAAGTGTAATTTGACTGCTTTCTGCTCTTTAGCACATAAAAACTTCTGTTTTGGCACTAACCTTTTCTCATTCACACCTAATGTCCGAAAATCTTTCGCTGCCCCAAATGGAGTCTTACTGTCAACTATTTAATTTGATCCAATTCAGTTCTTAATTATCCAATTTGATCCCAAATTGATATTAAATTGACAGTTGGGAACTAAATTGAAAAATGTTTCCAAGAATTTAGTTATTTATGTTGAAAATTGTTATTTAGTTTCTAAATAGCTCTCCAAAAGGTTTGATACTAGGATTTGAATTAAAAATATATATTTTCTTAGTGGTCTCGCACTCAAAAGTGAATTTAATGCTAATTTTGTATGAGAAGAAAATTTTGTATTTTTGGTTGCTGATTGGGGATATTTGGGAGCTATGTATCAAGACCCTTTTTGTTTATGAGGGCAGTTATTGTTAACCTCCTCTCTGCAGTTTATTGCCATCTTTATTGTGTTAGAACTTTGAGATATTTTCTATGGAAAACATGCTTTCATATTACCATAATCTCTATAATTATAGATTTAACACTTTTCTCACAATCTATTATCTATTTAATGATAAGAATGAAATATGGTAGGTTTGAT

Network for GWHGAAEX001724

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03194.14	LUC7	2	246	9.60E-80

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006376	Biological Process	mRNA splice site selection
GO:0003729	Molecular Function	mRNA binding
GO:0005685	Cellular Component	U1 snRNP

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	38.780
SRP064423	SRR2545915	Juvenile tuber	30.150
SRP108465	SRR5643513	five period of Gastrodia elata	24.850
	SRR5643514	five period of Gastrodia elata	25.730
	SRR5643515	five period of Gastrodia elata	23.820
	SRR5643524	five period of Gastrodia elata	21.310
	SRR5643525	five period of Gastrodia elata	41.230
	SRR5643528	five period of Gastrodia elata	28.470
	SRR5643658	five period of Gastrodia elata	37.460
	SRR5643659	five period of Gastrodia elata	34.560
	SRR5643660	five period of Gastrodia elata	38.420
	SRR5643661	five period of Gastrodia elata	34.110
	SRR5643662	five period of Gastrodia elata	32.370
	SRR5643663	five period of Gastrodia elata	35.580
	SRR5643664	five period of Gastrodia elata	36.890
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	33.060
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	18.210
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	29.860
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	36.500
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	45.880
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	44.130
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	35.690
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	36.490
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	24.860
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	28.840
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	23.890
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	23.890
SRP279888	Gastro	Gastrodia elata tuber	47.38
	Juven	Juvenile tuber	32.67
	Mother_Gastro	Mother tuber of Gastrodia elata	35.66
	Mother_Juven	Mother tuber of Juvenile	29.92