Gene detail

Detail information of GWHGAAEX001732/evm.TU.scaffold_111.120

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672135375\|ref\|XP_008791360.1\|	0	PREDICTED: E3 ubiquitin-protein ligase HOS1-like isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q84JU6\|HOS1_ARATH	0	E3 ubiquitin-protein ligase HOS1
trEMBL	tr\|M4QK49\|M4QK49_VITVI	0	High expression of osmotically responsive protein 1 {ECO:0000313\|EMBL:AGH20655.1}
TAIR	AT2G39810	3.00E-165	ubiquitin-protein ligases

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000111	3344580	3383489	-

Transcript Sequence
>GWHTAAEX001732 ATGTCGTCGTCTCGCATCCGCCGCAGACCCCTCCCAACGCCGCCTCGTAAGGATGCTTTGGAGCACTTGGCATCAATTGATTTACATGATTTGTGCAATGAAGCAAAAGTAGAGCGTTGCCGGGCGACTAGGGATTTGAGTAGCTGTGGCCGGTTTGTTCAAGATGTATTGACCTCATGTGGACATGCCTCTCTATGTGCAGAATGTAGTAAGAGATGTGATGTGTGCCCAATTTGTAGAATTTCTCTCCCAGTCAATGGAAATAGGCTAAGACCTCGCCTTTATTATGAATGTTCAAATGCTGGCCTTACTTCTAAGAGATATGCTGACAGATTTCAGGAGAAGGATGATAGCAACGATCATTTTATGGCTATTCAAAATCTGTATACATTGTTTGATGTTGCACTTGATAACAACTTGGTTTCTTTGATTTGCCATTATGTTACAGATGTTTGTATGGACGAGAATGCAGTATCTAGTGATCCTGTTCTTTCTTTTTTATTGGATGAAGTTGTTGTGAAAGACTGGTGTAAACAAAGATTGAAGGGTATAGTTCATGATCTTCATATAGCATATAAGCTTGACTTGAAAGAAATGAAGTCAAACTTGCTTTCATTTCAAAAGTTAGCATCACAGTTAACTGGCATATCTAATGTTCTTGAGGTTATGACTTCTTCATTCAAGGACAATCTCTCAGCGCAGCTGAATGATTTACATTTACTTCTGAACAGCACACTGAAGACAAAACAGCATTTGGAGACCATGATTTGGTGCATTCAGCATGAATTTCTTGAGAATGTCCCGTCACGTCATCCTGATTTTCAATTATGGGCATCACAAGCTCAGGAAAGGAAATCAGCCGTTGTTAAGCAATCCTGGCCTGATAATTCAAGTTTCTTGGCATATTATGGAAATCGATCTATGCCTGCATTGTTTATTGAGCAAGCATTGTCCAATCTTGAAATAGAAGAATGCTACAAAGAAAAACATGATGAAATAGATATATTTTGTCTGCAGGACACAAATTCTCCATTAATGTTTTCTTCTAAAATCAATGAGTCATACAGGAATCATCCATCAGAGTGCTATCCATTTAAGCATGCACGGGCTGCTGCCGATGTAATCTTCTTACGCGGGGCATCTGATATGGTGGTTGCTAAAAGAGCAATTTTTTTATATTATTTATTTGATCGGCATTTGACTTTACCAGATGCTCATTGGAAGTATCTTGTTGATGATTTTGCCTCATCATTTGGTATAAGTAAACTTTCACTACTGGAATCCTTAGTGTTTTATCTTCTTGATGATCACACTAGTCAAGCCTTGCAGGAAGCTTGCGCTCTTCTTCCAAAAATTGCTAGCCCAGACACACATCCAAAGGTAGCACAAGTTTTATTAGAACGCCAATGCCCAGAGACTGCATTATGTGTTCTGCGTTGTACTGGGCATGATGGCTTTGATGGATATGATGATTCTGAGGAAGACTCTGGCAAGTTTGTGACACTTGATGAAGCAATTACCATTCTCCGTGTTAGAATCGAGTGTGCGCTTTTAACGGAAGCCTTTATGTATCTGAGATCGTACTGCCAATACTTGAAAGACCTCGCATCTGGCCATCAAAATGTTTCATCTTTGAACAGTCTAAAGCATGACTCATGGATACAGCATTTGGAAATATTAGTGACTGAAATGTGCTTGCTATGTATACAAAGGAACATTATAGATAGAATGATTGAGTTGCCATGGGATTCTAGGGAAGAGAAGTATATCCACAAATGTCTTCTTGAGCATGCTCATCAAAATCCTCCATCTATTTGTGGCAGCCTTCTTACAGTGTTTTATCTTCAGCGATATAGATATATTGAAGCATTCCAAGTACACCGTGAGCTCCAAAATTTGGAGCAGAGATGCTTGGAAAATTTGGAAGGGGATATTGCATCCCAGATGAAATCAATGTCTCTTTGGAGATCTTCTTTGGTAGATAAAGGTCTAGATTTGCTACCTAAAATTCAACACAAGCAAGTAATAACAGGAAGCACATCTGAAACTGGCCCTTCCTTTAGCCAGGATGACCAAATGGAAATGCAGTCTTTTTCTGGGGAGCAGCTGAAGCCTTCTACTGTTTCAACTTCATCCAGAAAGTCACTCTCTCTTATTTTTCATACTGATCTGGATAATTTCTCTCTAAAAAAAACTTCAGTAGAAGCGCCTGTTAAACCATATGGCCTTGTTGATAATGCTCATACTGACAATTCAAGAGACATGCCTTCTACTGTTCAACAGAGGCATTTGTCTTCATTTGGAAGCTCTCAGAATGGTTTTCAGGTTATGCCATTGAAAGAACGGAATGCAAATCCATTACGGAGTTCTCTACCTGGCCAGCCATTTACTGGAAATAATGGTTCCAATACAATAGTGTCATTTGATTCCATAAGGCGTGCTGAAAATTCCCGTAGTCCTTCTGTTGGAATTACTTCTCGAGATCACATGGATCATGTTTATGTTTCTAACGGCTTTAGTTCTCTGAAAAATGCGAATCATGACCAACTTCAGAGAAGGCCAGAGAAGCAGAATCATCAATTGGACGGCTTCTGGAGTTTGAGCAACTCTGAGGATTCAACTCATCTTTTGAGCCTTGAAAATAGAGAATCTCCGACTGAACTGTTGAGCATGAAAGTTGGCTCAAGATGGAGATCTGATGAATCCAGTGAAGATGAGGCTGATCAGATTGATAAAAAACTGGTTGGTCGGTCTTTGTTTCCTTTGAGAAGACGATCAAGGCACCTATGTAGATAA

Network for GWHGAAEX001732

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13934.5	ELYS	311	596	1.50E-49

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	18.870
SRP064423	SRR2545915	Juvenile tuber	15.590
SRP108465	SRR5643513	five period of Gastrodia elata	14.040
	SRR5643514	five period of Gastrodia elata	11.940
	SRR5643515	five period of Gastrodia elata	11.370
	SRR5643524	five period of Gastrodia elata	12.510
	SRR5643525	five period of Gastrodia elata	10.150
	SRR5643528	five period of Gastrodia elata	10.780
	SRR5643658	five period of Gastrodia elata	10.360
	SRR5643659	five period of Gastrodia elata	13.400
	SRR5643660	five period of Gastrodia elata	11.560
	SRR5643661	five period of Gastrodia elata	10.950
	SRR5643662	five period of Gastrodia elata	10.240
	SRR5643663	five period of Gastrodia elata	12.020
	SRR5643664	five period of Gastrodia elata	11.360
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.140
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.090
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	16.100
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	14.090
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	20.200
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	23.110
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	17.410
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	18.720
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	19.460
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	21.100
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.690
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.690
SRP279888	Gastro	Gastrodia elata tuber	15.50
	Juven	Juvenile tuber	15.84
	Mother_Gastro	Mother tuber of Gastrodia elata	14.28
	Mother_Juven	Mother tuber of Juvenile	20.08