Detail information of GWHGAAEX001746/evm.TU.scaffold_112.10
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-47 | FOG: PPR repeat |
| nr | gi|586642585|ref|XP_006826399.1| | 1.19E-159 | hypothetical protein AMTR_s00004p00149230 [Amborella trichopoda] |
| Swissprot | tr|Q9FIX3|PP407_ARATH | 7.00E-48 | Pentatricopeptide repeat-containing protein At5g39710 |
| trEMBL | tr|W1NE34|W1NE34_AMBTC | 4.00E-160 | Uncharacterized protein {ECO:0000313|EMBL:ERM93636.1} |
| trEMBL | tr|W1NE34|W1NE34_AMBTC | 4.00E-15 | Uncharacterized protein {ECO:0000313|EMBL:ERM93636.1} |
| TAIR | AT5G39710 | 2.00E-47 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000113 | 217722 | 219221 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001746
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 210 | 239 | 0.00011 |
| PF13041.5 | PPR_2 | 241 | 290 | 1.10E-13 |
| PF01535.19 | PPR | 315 | 343 | 0.00071 |
| PF13041.5 | PPR_2 | 382 | 429 | 2.40E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 70.930 |
| SRR2545915 | Juvenile tuber | 78.720 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 55.520 |
| SRR5643514 | five period of Gastrodia elata | 57.080 | |
| SRR5643515 | five period of Gastrodia elata | 56.660 | |
| SRR5643524 | five period of Gastrodia elata | 55.070 | |
| SRR5643525 | five period of Gastrodia elata | 80.040 | |
| SRR5643528 | five period of Gastrodia elata | 60.570 | |
| SRR5643658 | five period of Gastrodia elata | 77.130 | |
| SRR5643659 | five period of Gastrodia elata | 60.820 | |
| SRR5643660 | five period of Gastrodia elata | 62.180 | |
| SRR5643661 | five period of Gastrodia elata | 59.340 | |
| SRR5643662 | five period of Gastrodia elata | 61.410 | |
| SRR5643663 | five period of Gastrodia elata | 69.630 | |
| SRR5643664 | five period of Gastrodia elata | 68.190 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 77.680 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 49.670 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 69.100 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 87.570 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 107.170 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 116.880 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 88.570 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 102.240 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 61.670 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 74.020 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 50.830 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 50.830 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 98.39 |
| Juven | Juvenile tuber | 87.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 80.20 | |
| Mother_Juven | Mother tuber of Juvenile | 102.08 |