Detail information of GWHGAAEX001747/evm.TU.scaffold_112.11


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|343085920|ref|YP_004775215.1|7.00E-55RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
nrgi|672193661|ref|XP_008776091.1|0PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Phoenix dactylifera]
Swissprottr|O22938|Y2182_ARATH0Leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 (Precursor)
trEMBLtr|A0A061F432|A0A061F432_THECC0Leucine-rich repeat protein kinase family protein isoform 1 {ECO:0000313|EMBL:EOY09274.1}
TAIRAT2G418200Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000113223383226854+
Transcript Sequence

Network for GWHGAAEX001747

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00560.32LRR_11171380.88
PF00560.32LRR_11401610.29
PF13855.5LRR_82132711.00E-06
PF00069.24Pkinase6128801.40E-25
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_LRR-XI-1

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468Biological Processprotein phosphorylation
GO:0005524Molecular FunctionATP binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms5.230
SRR2545915Juvenile tuber7.530
SRP108465SRR5643513five period of Gastrodia elata6.960
SRR5643514five period of Gastrodia elata8.330
SRR5643515five period of Gastrodia elata3.420
SRR5643524five period of Gastrodia elata6.400
SRR5643525five period of Gastrodia elata12.890
SRR5643528five period of Gastrodia elata5.920
SRR5643658five period of Gastrodia elata11.100
SRR5643659five period of Gastrodia elata7.590
SRR5643660five period of Gastrodia elata5.380
SRR5643661five period of Gastrodia elata6.350
SRR5643662five period of Gastrodia elata4.960
SRR5643663five period of Gastrodia elata5.620
SRR5643664five period of Gastrodia elata4.700
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_17.140
SRR6049655Rhizomagastrodiae_C368-T10_good_17.400
SRR6049656Rhizomagastrodiae_C368-T07_good_111.230
SRR6049657Rhizomagastrodiae_C368-T07_good_16.840
SRR6049658Rhizomagastrodiae_C368-T04_good_16.620
SRR6049659Rhizomagastrodiae_C368-T04_good_14.520
SRR6049660Rhizomagastrodiae_C368-T01_good_17.280
SRR6049661Rhizomagastrodiae_C368-T04_good_16.860
SRR6049662Rhizomagastrodiae_C368-T01_good_113.250
SRR6049663Rhizomagastrodiae_C368-T01_good_19.480
SRR6049664Rhizomagastrodiae_C368-T10_good_112.680
SRR6049665Rhizomagastrodiae_C368-T10_good_112.680
SRP279888GastroGastrodia elata tuber 3.24
JuvenJuvenile tuber8.84
Mother_GastroMother tuber of Gastrodia elata 1.02
Mother_JuvenMother tuber of Juvenile 1.48