Gene detail

Detail information of GWHGAAEX001757/evm.TU.scaffold_112.22

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2664	1.00E-115	Small nuclear RNA activating protein complex - 50kD subunit (SNAP50)
nr	gi\|743784349\|ref\|XP_010921639.1\|	0	PREDICTED: snRNA-activating protein complex subunit isoform X3 [Elaeis guineensis]
Swissprot	tr\|Q8L627\|SRD2_ARATH	4.00E-102	snRNA-activating protein complex subunit
trEMBL	tr\|M0RFC5\|M0RFC5_MUSAM	8.00E-163	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P04480_001}
TAIR	AT1G28560	1.00E-115	snRNA activating complex family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000113	444743	474669	-

Transcript Sequence
>GWHTAAEX001757 ATGGAGGAGGCTACTGAATATTGCCATCAAGACAGTGAGAGATATCTTTCTGTTGTTCGTGGTGGGCCAATTTTTGTTCCCAATCAGGCTGGCCCTATGACCTCTGTTCCTGACTTTAAAGCTTCATTGCTTCAAGAACTGAGTGATCTGGAAGCTGAATTGGTTTTGAATGATGATTTTGATGAAGAGCTCTCGGTTGCTGATCTTAAGGTTTTTTCCGAGGAAGAGTTGGTAGAGATGGCTCTCAAAGAAGAATTTGAGCATGATTCTGGGAAGGAAGAGTCCTTTCAAAAGCATGGTAAAGCTATTTTTACTGGTGACGATGTTTTAAATATTAACAAAGATATTCTTTGCTCAAAAACTGCTATAAATGAGAGCAGCTATTTGGAATCATCAGCATCTTTGAATGACACACGTTTGGTGATTTGTGCTACTGATAATTCAGAAAAGAAGGCTCAGCGGAAAATAAGTAAAAAAAGAGGAAGGTTTTTTGATAGAACTACTCGAGCGGCTGAATTAGAAAGTAGCTATTTCGATAAAGTGAAACAGCTTGCAAAAATTAAAAAAAGGCAGGATGAAGACAAATTAGCTGCTAGGCTACATTCTTTCAGTGGCGACTCTAAATCTATGGATGAAGAAACTCTTACCATAGATAAAATTGAAACTATGCAAGCTCTTAGCCTTAAATCCATAACTTCCTCACTGAAGGTGAAATGTCTAACATCAAAAGCGCTGGTACCTGTATTCTATCCAGAAACTGTTCTCTGTATTGAGATTTATCATCCAAGCACCTCGAAGAAGACTCAAGAGTTCCTGGTCTTGGAAAGCCAAACTCTAACTGAACTGAGGGACAGCATCTACTGCTTGACGGACAAGCTGATGCAAGCTGCAGAGAAGCATGATCCTTCGGGTTATTTTCTCATCGAGGAAACCTTCTGCAATGATCTGCGAAGCCCCTCTGCAACCGATTACAGTGAACCTATATTCAATTGGCTTACGCTCCGCGCTGACGAGGCTGCGAAGAAGTGGGAGTACATAATGTCGGGCGAACTGAAGAAAAAGCAGAAGGAATTATTGGGCAGTTTTGGCACCTCCAGTCTGCCGAATTTCCGAGCTGTGGACATGGATAAAACCCGCTTCTGCGACCTGAGATTTAGGCTGGGAGCTGGTTATCTTTATTGCCACCAGGGGAACTGCAGGCATAGCATGGTGTTCAGGGATTTGAGGTTGATGAACGGTGAGGATTCGTGGAACCGGGCGGAGTATCCGATCCTGACCTTCCAGATCCGCCCCCGGCACAGGAAATGTTGCGTCTGCCATATATATGAGGCGGAGAAGATGACCGTTGGCGACAAGTGGGCCCCGGATAACCCCTCCTTTTTCTGCATCAAATGCTACTTTCTCCTCCATTACAAGCAGGACAACACCCTTCTCTATCCCCACACTGTCTACGATTACTTTCATGAATAA

Network for GWHGAAEX001757

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12251.7	zf-SNAP50_C	269	486	1.60E-66

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	21.790
SRP064423	SRR2545915	Juvenile tuber	25.250
SRP108465	SRR5643513	five period of Gastrodia elata	17.900
	SRR5643514	five period of Gastrodia elata	22.520
	SRR5643515	five period of Gastrodia elata	19.250
	SRR5643524	five period of Gastrodia elata	20.750
	SRR5643525	five period of Gastrodia elata	19.240
	SRR5643528	five period of Gastrodia elata	18.070
	SRR5643658	five period of Gastrodia elata	18.090
	SRR5643659	five period of Gastrodia elata	21.430
	SRR5643660	five period of Gastrodia elata	23.590
	SRR5643661	five period of Gastrodia elata	21.680
	SRR5643662	five period of Gastrodia elata	25.730
	SRR5643663	five period of Gastrodia elata	29.490
	SRR5643664	five period of Gastrodia elata	24.960
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	18.980
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	18.660
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	20.150
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.600
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	16.450
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	16.570
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	20.440
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.660
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	20.500
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	16.630
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	21.200
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	21.200
SRP279888	Gastro	Gastrodia elata tuber	24.34
	Juven	Juvenile tuber	31.52
	Mother_Gastro	Mother tuber of Gastrodia elata	19.99
	Mother_Juven	Mother tuber of Juvenile	28.55