Gene detail

Detail information of GWHGAAEX001768/evm.TU.scaffold_112.35

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1356	0	Putative transcription factor 5qNCA, contains JmjC domain
nr	gi\|743784984\|ref\|XP_010921791.1\|	0	PREDICTED: lysine-specific demethylase JMJ25 [Elaeis guineensis]
Swissprot	tr\|Q9SSE9\|JMJ25_ARATH	5.00E-94	Lysine-specific demethylase JMJ25
trEMBL	tr\|W9SEJ9\|W9SEJ9_9ROSA	0	Lysine-specific demethylase 3B {ECO:0000313\|EMBL:EXC02777.1}
TAIR	AT1G09060	0	Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000113	742647	758396	+

Transcript Sequence
>GWHTAAEX001768 ATTGCAGAAGCTCTTCTCTTCTTCTGTCAAACCACCATTCTTCCTCGTCGTCGAAGACCCTATCAGGGTTATTTTCGTAATTGTAAACGCAGATAACTTTCCACCTTCTTCAGGTACTGCTGAGATCCTTTGGTCGTTCTCGAATTTGGGATTTGATTTAACGCAACCTTCCATGCATTCTCCCTCGCCCTCGCTCTTCCCGCACATTAGCCGGGCTCCGTCCCCAGAAACCCTAGAAATTCCCTTCGCTTTCCAATTCGTATTCCTTCGAGTCCTTCTGCCCGTTCGCTTCGATCCCTTCCGGAGGCTCCTCGATACCCCAAATTCCAGGCTGGGCTAGGGTTTCTACCGAGCGGCGGAGGGTTTTCGGTGGGAGGGTCGTTGATGGAAGACAATGCGGGGATTCCTGAGGATCTTCGTTGCAAGCGGTCGGATGGGAAGCAGTGGCGCTGCAGCGCGTTGTCGATGCCTGACAAGACCGTGTGCGAGAAGCACTATATCCAGGCGAAGCGCCGGGCGATGAACTCCGCCTTGAGGGCGAGCATGAAGAAAGCCTCAAAGCGCAAGTCTCTGGACAACTCCGACATCTATCTGGAGAGCCGGCACAGTGAACGGGAGGCATCTCCATCGTCCGTCTCTCCTGTGAACCCTGCGCGGGAATCGGCTTCGCTGCCTGCTTTCAGGAAACACAGGGAGAGGGCGCCCGAGAGCCGTCGGCGTTATTTATCAGAGGCAGCAGGGGCTCGAGGCTCACCAGATCATGGCGATTTTTTGCAAACTGATGAGGTGCAGGTTGAAGATAGCAAGGCTCAGTCGGTGTACTGCACTTCTTCTGGCAAGGGGACGAAGAGTTTTAATGGGAATGGTGCAGCGGATTATTCTGGGAAAAGTTCCGATTCTTATGGTGAACCTGAAGGAATAACTTGTCATCATTGCCGGAGGAACTATAGGGCTAATGTGGTGTGGTGCGCAAGCTGTGATCGAAAAGGATATTGCAATGGTTGCATCATAACATGGTACGCTGAGCTACCTATTGAGGATATTCAAAAAGCATGCCCTGCATGTCGTGGTATCTGTAATTGCAGGATCTGCTTGCGAGGCGATAACTTGATTAAGGCAAAAGTTGAAGGCATTGCCGCAGTTGATAGATTGGGATATCTTCACAGCCTTTTGGCCTTCATATTGCCTGTTCTTAGGCAGATCTATTCTGAGCAGTGTTTTGAGATATCAATGGAAAAAAAAATATACGGAATAAAGGCTGACATTCCTCGTGAAAAAATAAATGCAGATGAGCAGATGCGATGTGATCTTTGCAAAATACCCATTTTTGATTATCATCGTCATTGTAGTCAATGTATGTATGATCTGTGTCTCATTTGTTGCCGTGATATTCGACATGCATCTCTGGTTGGTGACAATGGCGAATCTGCAGCAGATACAACTAATAATGATATATTGACTTCTCAATCATCTAATGTGGGCCTAGATTTTGCTCAATTGTTTCCCAATTGGAAAGTTAACAATGATGGAAACATACAGTGCGGAACTGAGGAGGCTGGTGGTTGTGGTTTTACAAAGCTATTATTACGACGGATTCTCAAAATAAACTGGACTGGAAAGCTGTTAAAAAATGCGGAGGAAATGGTGAATGGCTGCATAGGATCTGATCTGCATGGTCCTGATAGATGCGCTTCTGTTTGCATAAGAGCTTCAACTTCCAGGTTATATGAAGCAGTTCAAACAGATTTTTTGAAGTGTTCCTACAGAGATGATCATAGTGATAATTTCTTGTATCATCCTTCTTCAGAGGATATTAAACTTGAAGGCATTAGTCGTTTCCATAAGTTTTGGGTCAAAGGTCAACCAGTTATTATAAAAAATGTGCTTGATCGCTCATTAGCATCTGGCTGGGAACCCATGGATATATGGAAGGGAGTTCAGGAGACGTTGGATGAAGAGATGAATGAAAATAATGTTATTGTGAAGGCTGTTGATTATCTAAGCCAGTCAGAGGTTGATATTGAGCTTTCTCAATTTATCAATGGATATTCAAAAGGATATATAGATGAAAATGGTCGGCCAAAAATGTTAAAGCTGAAAGATTGGCCACCTCCAAGTGCCTTGGAAGAATTTTTATTATGCCATAGGCCAGAATTTCTTAGCAATTTTCCTTTGGTTGAATTTATACATTCCAAATGGGGTCTTCTAAATCTTGTCTCTAAGTTGCCACATGAGACTCTACAGTCTGAAGCAGTACCTAAGATTTTCATTACTTATGGTACACATAAGGAACTTGGTAGAGGTGATCCCGTGACGAAACTTCAGACAAACATGAGTGACATGGCTTGTCTTCTAATGCATGCCACTGAATATGATTTTGGAGATTATCAAAGACCCATTGTTGGAGAGCTAGACTATCTATCATACTCTGGCAATGGAGTTACTTTCTTGGAAAACAAAAGTTCTGAATCCGTCCAGATCGGAAATCCTGAACAAAGTCACTACAAAGCTGGAACCATTTGGGATATTTTCCGTAGGCAAGACGTTCCAAAGTTGAATCAATTCTTAAGAGCTCATTCAGACAAATTTGCAAATTCTGTTACACACCCTGTCTATGAACAAGTTTTCTATCTGAACAATGAAGCCAAGAGAAAATTGAAGGATGAATTTAATATAGAGCCATGGACGTTCCAACAGCATGTTGGGGAGGCTGTTTTTGTACCTGCTGGTTGTCCTTTTCAAGTTCGAAATCTTCAGTCTTCGGTGCAGCTGGCATTTGATTTCTTATCTCCGGAGAGTTTGGGAGAGTCCGTCCGAATGGCACATCAGATTCGTAGCCTCCCATCCGACCATGAAGCCAAGTTCAAAATGCTCGAGGTGGAAAAGATGTCTCTGTATGCTGCCAGTTCTGCCATCAGAGATGTTCAGAAGATTGCCCTTGATCCCAAGCTAAGCGCAGAATTTAAATTTGAGGACAGCAGGCTGACTGCTATGGTTTCAGAGAACTTGGAGAGGGTCTCAAAGCGGAGGCAGATTGCCTGTTCTTCTTCTTGACTTCTTCAACAGCAATAATAATAATAATATAATATTATTTATATGTATTTATTTTTGTAAGTGTACATAGACGGCACTGCTGCAAGGAGAAAACTGTTTTAATTTAAAAGCATGCGCAATTAAATTGTAAATATAGCTCCAGCCACAAAAGATATAAGCCTTAATATATACATATATATATATAGAATGATCAACTTTGTTATAAATATAAATATGGCTATTGTGTACTCTCATCTAAATTGCATAGGAATAAGTTCATGAGATATAAATAAAAGATCGTTGCTTGAAATTGATGTGCACACGATCATTGATTGTAGTGTAATGTGCCCAATTAGGGAGATGTGCTTACACAACTCCCACGGACTAATTTTTATTCATGTCCATTCACGACTCCTTTTTCGCTATAATAAAATGGGCTTAATGCACTAAATATGATTTTATTTATATAAAACCATTGTGCAAATAAAAAGCTAATTTACAAATCCCATCTTAATTTTCAAATAAATGAAAGCAAATCCTATTTTAAATTCAACCCAATATTACTCTTAATTACTATTCAAGTTTTAATTTGATTGGCAGGGGTGCGCCAAGCCTGTACAACAGTGCAACGCACAGGCGACACTAGATAACCCCAGCAGCAAGCTACTGTGATGGGCTATCCCCCAACAAAAATTAATTTAATATCATAATGAGCCAATGGCCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTAT

Network for GWHGAAEX001768

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08879.9	WRC	8	48	2.50E-14
PF10497.8	zf-4CXXC_R1	175	245	1.20E-08
PF02373.21	JmjC	704	800	3.50E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Jumonji

KEGG pathway

KO	Enzyme	pathway	mapID
K15601	KDM3	Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	31.160
SRP064423	SRR2545915	Juvenile tuber	29.270
SRP108465	SRR5643513	five period of Gastrodia elata	29.080
	SRR5643514	five period of Gastrodia elata	29.140
	SRR5643515	five period of Gastrodia elata	23.320
	SRR5643524	five period of Gastrodia elata	30.780
	SRR5643525	five period of Gastrodia elata	40.680
	SRR5643528	five period of Gastrodia elata	32.340
	SRR5643658	five period of Gastrodia elata	46.350
	SRR5643659	five period of Gastrodia elata	32.520
	SRR5643660	five period of Gastrodia elata	37.180
	SRR5643661	five period of Gastrodia elata	31.610
	SRR5643662	five period of Gastrodia elata	25.790
	SRR5643663	five period of Gastrodia elata	26.990
	SRR5643664	five period of Gastrodia elata	30.190
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	36.440
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	26.420
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	37.120
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	43.290
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	44.400
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	49.250
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	49.960
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	41.030
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	34.100
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	46.520
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	33.120
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	33.120
SRP279888	Gastro	Gastrodia elata tuber	26.63
	Juven	Juvenile tuber	51.50
	Mother_Gastro	Mother tuber of Gastrodia elata	27.77
	Mother_Juven	Mother tuber of Juvenile	34.97