Detail information of GWHGAAEX001776/evm.TU.scaffold_112.43
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|374987387|ref|YP_004962882.1| | 1.00E-15 | putative WD-40 repeat protein [Streptomyces bingchenggensis BCW-1] |
| nr | gi|672134250|ref|XP_008790776.1| | 0 | PREDICTED: uncharacterized protein LOC103707865 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q3Y8L7|DAW1_CHLRE | 6.00E-10 | Dynein assembly factor with WDR repeat domains 1 |
| trEMBL | tr|I1QLK3|I1QLK3_ORYGL | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA08G0230400.1} (Fragment) |
| TAIR | AT5G50410 | 3.00E-42 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000113 | 968872 | 1071482 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX001776
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 536 | 568 | 0.19 |
| PF00400.31 | WD40 | 852 | 887 | 0.021 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0019835 | Biological Process | cytolysis |
| GO:0050829 | Biological Process | defense response to Gram-negative bacterium |
| GO:0005515 | Molecular Function | protein binding |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 19.680 |
| SRR2545915 | Juvenile tuber | 30.350 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 24.120 |
| SRR5643514 | five period of Gastrodia elata | 23.320 | |
| SRR5643515 | five period of Gastrodia elata | 23.740 | |
| SRR5643524 | five period of Gastrodia elata | 23.090 | |
| SRR5643525 | five period of Gastrodia elata | 19.940 | |
| SRR5643528 | five period of Gastrodia elata | 19.690 | |
| SRR5643658 | five period of Gastrodia elata | 23.680 | |
| SRR5643659 | five period of Gastrodia elata | 25.520 | |
| SRR5643660 | five period of Gastrodia elata | 26.300 | |
| SRR5643661 | five period of Gastrodia elata | 23.780 | |
| SRR5643662 | five period of Gastrodia elata | 25.990 | |
| SRR5643663 | five period of Gastrodia elata | 27.100 | |
| SRR5643664 | five period of Gastrodia elata | 26.650 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 28.860 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 27.320 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 27.660 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 33.920 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 35.650 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 43.590 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 35.250 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 37.820 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 24.160 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 28.110 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 23.390 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 23.390 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 34.29 |
| Juven | Juvenile tuber | 36.23 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 19.95 | |
| Mother_Juven | Mother tuber of Juvenile | 22.76 |