Gene detail

Detail information of GWHGAAEX001777/evm.TU.scaffold_112.44

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|383766293\|ref\|YP_005445274.1\|	7.00E-10	urease accessory protein UreF [Phycisphaera mikurensis NBRC 102666]
nr	gi\|743770327\|ref\|XP_010915453.1\|	3.18E-56	PREDICTED: urease accessory protein F isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q0E3L5\|UREF_ORYSJ	9.00E-52	Urease accessory protein F
trEMBL	tr\|Q7Y0R6\|Q7Y0R6_SOLLC	1.00E-55	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc03g031430.1.1}
TAIR	AT1G21840	1.00E-50	urease accessory protein F

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000113	1090305	1101074	+

Transcript Sequence
>GWHTAAEX001777 TTCAAAACTAATCCAGCGAGACAATAAATCCGCTTCGTATTTTTAATCACTGCAACAATCCAATTTTTCAGTCTCTCTTTCGATTCTCTACCGTCACTATCTTCCTCTCTCAGAAATCTGGAAAGCTCGAACTTGCATCGCAGTGCAGAGTTCTTCGAATCTCCCTCAGAGGCGTTCTCATTCTATCCCACCGCGTACCTTCCTATTCCGCAGCTTCCGAGTTTGTTAATGGAGTTGGAATCAAACTCAGTCAACATTCACCATTGGAGCCAATGGCAGCTGCTGGATTCTTTTCTTCCAACTGGTGGTTTTGCTCACTCTTATGGCCTTGAGGCTGCTATTCAGTCTTGCTTTGTGGCTGGTCTTGAGGATCTCCAGACCTATACTCTTAGTGTCTTGGACAACACTGGAGATTCCATCTCTGAAGAATATTAGAGAGACAGCCTTGGCATCAGGGGCTGCTTCCTTCCACCATGCAACAGTTTTTGGGCTTGTATGTGGACTACTTGGCTTTGGAAGTGAGTTTTCTCAAAGGGCATATATGTTTGTGACAATGAGGGAAGTTCTTTCAGCTGCTACGAGGCTAAATCTCATTGGACCAATGGGAGCAGCTGCTCTGCAGCATGGAATGGGTTGCAACGCTGAGCTGATGCTGAAGAAATGGATGGATCGCCTAGTTGAGGATGCATGCCAAACCACTCCTTTACTTGATACTATCCAGGGATGTCATAGTTACTTGTTTTCAAGGCTGTTCAGCTCCTAAATTTTTTTTGAAAAAATTCCCTGTTTCTCGACTTTTGATATTTCTTGGTACCTCTTCTTTTTGTGAAACTAGTAATCCACTATCAGCATATTGTAATCTTGTTCAGTAGAAACCAAAAATTTAAACAGAGTTCTATAATATGCTGATTGTCATTATTTTTTCACATTTTGATTTTTTATTTTAGAGCATAGTCATCCTAGATTTGAGCTTCTCTTAAGCTCTTGTTTGTTAATCTTGGCGCTGGTGATATAAATGAAAAAATAATGTTGTAATTATAAATAACTGTTTTTCTTCGAGTCTTTTTGTTTTTCTCATTTTTGGCTCTTTGATAATCCTTGGCATGTGAAAGACATTTACCTGGGTGCATGTTTTTTATGTCAATCTGATCAAATGAAATGGCTAATGAAAATTAATAGGTTTTGTACATGTTGAGTCATTTCTATGAGGTTTTCTTTATGGCCATCCTAGTGAGTCGAATAATTTTTTGTTGTACAATGCATAACTATTGTGGTTTGAGGGGATAAAATTTGAGCTTTGAGGTAGATTACTCGTATCTATTTCCTTGTGGTTTATGCTTGCGTACAATTCTCCTAAATGAATGAATTTAATATTGTACTTACGTACAATTATTTTGTTCTTTAGCTTAATTAATGAAAGTTTTGTGGCTTTCACGGGATTTAAAATAGTGATTTTTAGTTTTGATCTTGTAAGATTTAGCGTTTGATTACTAGTTTTAGCAATTAAAATGTGAAGCTTGGTAGTCTTTCTAAGGACATTAAAGATCACCGCATGAACATTTCTTTTTTGTGTTCTTTCATTTGATCATGCTTTCTTCAGGCACAAATTGCATTTTTTTCAATCCACAACACATACTCACATCTTGTAGCTATTTATTAGTTTTGGCTATAAAATTGATTTTTTATATTCGGGTGCTGTTGGCATCTAACCAGCGTTAGTAGGATCCCTTAGTCATAATTGTATACTACTCATAATTCTAATACTACCTCATGATTTCATGTAGTGCCCAGTTTACTTGTCTGACATTGTAGTATGATATGTATACTGATTATTTACCTATACATGATAATTTAGTTATCATTTAACATCCAATAGCAAAACATTTTCCACATATTTATATTTAGTAAAATCAGAGAGATATAACATCCATTACTTGTAAGTGCTTGTTCTTTTATTTTGCAATACTTTGTGTTCAAACTACTAAGATGGATTCTATGTCATCTCATCATTGAAATCATTTTGAACTTGCGTACCAATATAAAATTTTATTAATTAAGCACTGATTTGATGATTTTTATACTTGATCTTTTGTAGGCATGTTTTATTTTAATGATGGTATTGTTTAAGATGCCATATTATTTGGTCTAGTGCCCTTACAACTTTGCCATCATATGATAAATTTTCAGATGATCATTTATCTTGTGATTGCTCATGTTTATTTTTAGAGTTGTTATGCTTCACCGTTTTCTTAAAAGATATTTTGATATTTAAGAGCTTCACATTTCCCCGCTTTAACAGCTGACTTTGTTAATTAAATGCATATTTCCAAGAATCACCTATTGAGTACAAATGATTTTAGATCTGCAGGCTTTAAAATTGGCCCTAATGGTTTGTCTTGCATGGCATTTAACTTTCATATAACACTTAATATGCTGTTAATTGTAGCTACCCAAATTTCCATTTATCAAGGTATTACTCATTTTTGGTCTATTGGCCTCTCAGCTATAATACCTCAGGCTATACTAAGCAAGGTGCTATTCACTTTTTTGTGATCCCCCCCTCCCCATATTAAGTTGAATGTCAAAGTCTTGTTATTAGATAGTTAATTTCAATATGGTCTGTAGGAATGATTTCACTAAAAGCATGCTTAATTTTGAACTTTTAATTAGACACTATTGTTATTTTTAAAGATGATGTTTAGTATTTTAAATTTTTTCTTATGTAACTTTGATTCTTTGTCTCAACTTTTACTGTGGATTATGTTCATTTATGCTATCATTCTTTCTTAGAAACTTGCCAGGAGCTTCACTTTGTCCAAGTTTTACTATGTTCAATTCTTCATGTCCCCAACAGTTACTCTCTGCCTTCTTCATATTCGAGTTTATTGTAAGCTCACTCTTAGTTAGTTTTTAAAGGACATTCAATTTTGATACCAATTGTAATATCATATGCTATATTAAGAAATTTCTCTTTAATTTGGCCCATTTAATTCTAGGCTAGACCTCTTGATTTGGTTTCCAGATGATAATTTGTCAAAGGGTCACTCATCTTAGGAGTGTTCCCCCTATAAGCACACAAAACTTTTGACTTATCATTAGAAACTCTATTTTTATCTCAAAAGTGCATCACTTGATATTTCCTAGCTCTTATATAATTTGAAATAGTTTTGTGATGGCTCGATGCCGGTTCAGCGAGAACTGTCCCGACATCAGGTACTCACATACCACAGGATCATATTGAGCAATTTTGAAAGAAAAGGAACACATA

Network for GWHGAAEX001777

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01730.15	UreF	38	101	1.70E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0016151	Molecular Function	nickel cation binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	17.720
SRP064423	SRR2545915	Juvenile tuber	13.780
SRP108465	SRR5643513	five period of Gastrodia elata	6.690
	SRR5643514	five period of Gastrodia elata	10.840
	SRR5643515	five period of Gastrodia elata	9.930
	SRR5643524	five period of Gastrodia elata	9.780
	SRR5643525	five period of Gastrodia elata	9.380
	SRR5643528	five period of Gastrodia elata	5.470
	SRR5643658	five period of Gastrodia elata	7.290
	SRR5643659	five period of Gastrodia elata	8.730
	SRR5643660	five period of Gastrodia elata	10.110
	SRR5643661	five period of Gastrodia elata	5.300
	SRR5643662	five period of Gastrodia elata	5.710
	SRR5643663	five period of Gastrodia elata	9.610
	SRR5643664	five period of Gastrodia elata	8.670
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.280
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.780
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.290
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	15.720
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	13.530
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	17.960
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	13.750
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.830
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.500
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.880
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.020
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.020
SRP279888	Gastro	Gastrodia elata tuber	9.41
	Juven	Juvenile tuber	14.00
	Mother_Gastro	Mother tuber of Gastrodia elata	10.21
	Mother_Juven	Mother tuber of Juvenile	13.08